Mercurial > repos > devteam > freebayes
comparison freebayes.xml @ 4:e54bb199a47b
Fixed git revision string in tool_dependencies.xml and added functional test data
| author | greg <greg@bx.psu.edu> |
|---|---|
| date | Wed, 15 Aug 2012 10:43:46 -0400 |
| parents | 838dd557c84c |
| children | 949ac66308a7 |
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| 3:213a3d6b579a | 4:e54bb199a47b |
|---|---|
| 418 </outputs> | 418 </outputs> |
| 419 <tests> | 419 <tests> |
| 420 <test> | 420 <test> |
| 421 <param name="reference_source_selector" value="history" /> | 421 <param name="reference_source_selector" value="history" /> |
| 422 <param name="ref_file" ftype="fasta" value="phiX.fasta"/> | 422 <param name="ref_file" ftype="fasta" value="phiX.fasta"/> |
| 423 <param name="input_bam" ftype="bam" value="gatk/fake_phiX_reads_1.bam"/> | 423 <param name="input_bam" ftype="bam" value="fake_phiX_reads_1.bam"/> |
| 424 <param name="options_type_selector" value="basic"/> | 424 <param name="options_type_selector" value="basic"/> |
| 425 <output name="output_vcf" file="variant_detection/freebayes/freebayes_out_1.vcf.contains" compare="contains"/> | 425 <output name="output_vcf" file="freebayes_out_1.vcf.contains" compare="contains"/> |
| 426 <!-- <output name="output_failed_alleles_bed" file="empty_file.dat" /> | 426 <!-- <output name="output_failed_alleles_bed" file="empty_file.dat" /> |
| 427 <output name="output_trace" file="variant_detection/freebayes/freebayes_out_1.output_trace" /> --> | 427 <output name="output_trace" file="freebayes_out_1.output_trace" /> --> |
| 428 </test> | 428 </test> |
| 429 </tests> | 429 </tests> |
| 430 <help> | 430 <help> |
| 431 **What it does** | 431 **What it does** |
| 432 | 432 |