Mercurial > repos > devteam > freebayes
comparison leftalign.xml @ 30:ef2c525bd8cd draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit 24f33bda62a7b6771ad42a39fe8c683e09f6d8b8"
| author | iuc |
|---|---|
| date | Wed, 06 Nov 2019 17:02:57 -0500 |
| parents | 156b60c1530f |
| children | 57def2d7c093 |
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| 29:156b60c1530f | 30:ef2c525bd8cd |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="bamleftalign" name="BamLeftAlign" version="@DEPENDENCY_VERSION@-0"> | 2 <tool id="bamleftalign" name="BamLeftAlign" version="@DEPENDENCY_VERSION@"> |
| 3 <description> indels in BAM datasets</description> | 3 <description> indels in BAM datasets</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 38 <param name="ref_file" type="select" label="Using reference genome" argument="--fasta-reference"> | 38 <param name="ref_file" type="select" label="Using reference genome" argument="--fasta-reference"> |
| 39 <options from_data_table="fasta_indexes"></options> | 39 <options from_data_table="fasta_indexes"></options> |
| 40 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> | 40 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> |
| 41 </param> | 41 </param> |
| 42 </when> | 42 </when> |
| 43 <when value="history"> | 43 <when value="history"> |
| 44 <param name="input_bam" type="data" format="bam" label="BAM dataset to re-align" /> | 44 <param name="input_bam" type="data" format="bam" label="BAM dataset to re-align" /> |
| 45 <param name="ref_file" type="data" format="fasta" label="Using reference file" argument="--fasta-reference" /> | 45 <param name="ref_file" type="data" format="fasta" label="Using reference file" argument="--fasta-reference" /> |
| 46 </when> | 46 </when> |
| 47 </conditional> | 47 </conditional> |
| 48 <param name="iterations" type="integer" value="5" label="Maximum number of iterations" | 48 <param name="iterations" type="integer" value="5" label="Maximum number of iterations" |