comparison macros.xml @ 30:ef2c525bd8cd draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit 24f33bda62a7b6771ad42a39fe8c683e09f6d8b8"

29:156b60c1530f

<macros>
    <token name="@DEPENDENCY_VERSION@">1.1.0.46</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@DEPENDENCY_VERSION@">freebayes</requirement>
            <requirement type="package" version="0.1.19">samtools</requirement>
            <yield />
        </requirements>
    </xml>
    <xml name="citations">
        <citations>

                    <yield />
                </param>
            </when>
        </conditional>
    </xml>
    <xml name="par_min_cov">
        <param name="min_coverage" argument="--coverage" type="integer" value="0" label="Require at least this coverage to process a site" />
    </xml>
</macros>

30:ef2c525bd8cd

<macros>
    <token name="@DEPENDENCY_VERSION@">1.3.1</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@DEPENDENCY_VERSION@">freebayes</requirement>
            <requirement type="package" version="1.9">samtools</requirement>
            <yield />
        </requirements>
    </xml>
    <xml name="citations">
        <citations>

                    <yield />
                </param>
            </when>
        </conditional>
    </xml>
    <token name="@COVERAGE@">
        --min-coverage ${coverage_options.min_coverage}
        --skip-coverage ${coverage_options.skip_coverage}
        --limit-coverage ${coverage_options.limit_coverage}
    </token>
    <xml name="par_min_cov">
        <param name="min_coverage" argument="--min-coverage" type="integer" value="0" label="Require at least this coverage to process a site" />
        <param name="limit_coverage" argument="--limit-coverage" type="integer" value="0" label="Downsample per-sample coverage to this level if greater than this coverage" />
        <param name="skip_coverage" argument="--skip-coverage" type="integer" value="0" label="Skip processing of alignments overlapping positions with coverage greater than this" />
    </xml>
</macros>