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diff tool_dependencies.xml @ 8:28e422c589ac

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Fix for FreeBayes tool dependency git checkout commands. Credit goes to Lance Parsons.
author Daniel Blankenberg <dan@bx.psu.edu>
date Wed, 12 Sep 2012 13:06:51 -0400
parents d3bf1e86b243
children d291dc763c4c
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--- a/tool_dependencies.xml	Wed Aug 29 11:46:04 2012 -0400
+++ b/tool_dependencies.xml	Wed Sep 12 13:06:51 2012 -0400
@@ -4,7 +4,8 @@
         <install version="1.0">
             <actions>
                 <action type="shell_command">git clone --recursive git://github.com/ekg/freebayes.git</action>
-                <action type="shell_command">git reset --hard 9608597d12e127c847ae03aa03440ab63992fedf</action>
+                <action type="shell_command">git checkout 9608597d12e127c847ae03aa03440ab63992fedf</action>
+                <action type="shell_command">git submodule update --recursive</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">
                     <source_directory>bin</source_directory>