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diff leftalign.xml @ 28:977a5301b66d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit 9bbda385129b4bc34f66889d28c2570bf5bb2214
author iuc
date Tue, 06 Jun 2017 18:41:18 -0400
parents bf27106652f3
children 156b60c1530f
line wrap: on
line diff
--- a/leftalign.xml	Tue Jun 06 11:44:38 2017 -0400
+++ b/leftalign.xml	Tue Jun 06 18:41:18 2017 -0400
@@ -1,17 +1,11 @@
 <?xml version="1.0"?>
-<tool id="bamleftalign" name="BamLeftAlign" version="@DEPENDENCY_VERSION@-1">
+<tool id="bamleftalign" name="BamLeftAlign" version="@DEPENDENCY_VERSION@-2">
     <description> indels in BAM datasets</description>
     <macros>
         <import>macros.xml</import>
     </macros>
-    <requirements>
-        <requirement type="package" version="1.0.2.29">freebayes</requirement>
-        <requirement type="package" version="0.1.19">samtools</requirement>
-    </requirements>
-    <stdio>
-        <exit_code range="1:" />
-    </stdio>
-    <command><![CDATA[
+    <expand macro="requirements" />
+    <command detect_errors="exit_code"><![CDATA[
         ##set up input files
         #set $reference_fasta_filename = "localref.fa"
         #if str( $reference_source.reference_source_selector ) == "history":