view tool_data_table_conf.xml.sample @ 11:e9ebed0c12f6 draft

Check exit code instead of stderr, since FreeBayes writes warnings there (e.g. "Could not find any mapped reads in target region chr1:955302..955952"). Also document change of available options in FreeBayes >= 0.9.9.

<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
<tables>
    <!-- Location of SAMTools indexes and other files -->
    <table name="sam_fa_indexes" comment_char="#">
        <columns>line_type, value, path</columns>
        <file path="tool-data/sam_fa_indices.loc" />
    </table>
</tables>