comparison gffread.xml @ 1:48fe74f391ab draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/gffread commit a1517c9d22029095120643bbe2c8fa53754dd2b7

0:5f6e6582c01d

                <option value="-B">single-exon transcripts are also checked on the opposite strand (-B with -V)</option>
                -->
            </param>
        </xml>
        <xml name="trackname">
            <param name="tname" type="text" value="" size="30" optional="true" label="Trackname to use in the second column of each GFF output line" help="(-t track_name}">
                <validator type="regex">\w+</validator>
            </param>
        </xml>
        <xml name="merge_opts">
             <option value="-K">also collapse shorter, fully contained transcripts with fewer introns than the container (-K)</option>

                <option value="none">No</option>
                <option value="filter">Yes</option>
            </param>
            <when value="none"/>
            <when value="filter">
                <param name="range" type="text" value="" size="60" label="Only show transcripts overlapping coordinate range">
                    <help><![CDATA[
                    (-r [['strand']'chr':]'start'..'end') <br> 
                    examples: <br> 
                    1000..500000 <br> 
                    chr1:1000..500000 <br> 

1:48fe74f391ab

                <option value="-B">single-exon transcripts are also checked on the opposite strand (-B with -V)</option>
                -->
            </param>
        </xml>
        <xml name="trackname">
            <param name="tname" type="text" value="" optional="true" label="Trackname to use in the second column of each GFF output line" help="(-t track_name}">
                <validator type="regex">\w+</validator>
            </param>
        </xml>
        <xml name="merge_opts">
             <option value="-K">also collapse shorter, fully contained transcripts with fewer introns than the container (-K)</option>

                <option value="none">No</option>
                <option value="filter">Yes</option>
            </param>
            <when value="none"/>
            <when value="filter">
                <param name="range" type="text" value="" label="Only show transcripts overlapping coordinate range">
                    <help><![CDATA[
                    (-r [['strand']'chr':]'start'..'end') <br> 
                    examples: <br> 
                    1000..500000 <br> 
                    chr1:1000..500000 <br>