Mercurial > repos > devteam > kernel_principal_component_analysis
comparison kpca.xml @ 1:3d58aa83e4a3 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/kernel_principal_component_analysis commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:17:56 -0500 |
| parents | e9ebd4bfbdfc |
| children |
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| 0:e9ebd4bfbdfc | 1:3d58aa83e4a3 |
|---|---|
| 56 <inputs> | 56 <inputs> |
| 57 <param format="tabular" name="input1" type="data" label="Select data" help="Dataset missing? See TIP below."/> | 57 <param format="tabular" name="input1" type="data" label="Select data" help="Dataset missing? See TIP below."/> |
| 58 <param name="var_cols" label="Select columns containing input variables " type="data_column" data_ref="input1" numerical="True" multiple="true" > | 58 <param name="var_cols" label="Select columns containing input variables " type="data_column" data_ref="input1" numerical="True" multiple="true" > |
| 59 <validator type="no_options" message="Please select at least one column."/> | 59 <validator type="no_options" message="Please select at least one column."/> |
| 60 </param> | 60 </param> |
| 61 <param name="features" size="10" type="integer" value="2" label="Number of principal components to return" help="To return all, enter 0"/> | 61 <param name="features" type="integer" value="2" label="Number of principal components to return" help="To return all, enter 0"/> |
| 62 <conditional name="kernelChoice"> | 62 <conditional name="kernelChoice"> |
| 63 <param name="kernel" type="select" label="Kernel function"> | 63 <param name="kernel" type="select" label="Kernel function"> |
| 64 <option value="rbfdot" selected="true">Gaussian Radial Basis Function</option> | 64 <option value="rbfdot" selected="true">Gaussian Radial Basis Function</option> |
| 65 <option value="polydot">Polynomial</option> | 65 <option value="polydot">Polynomial</option> |
| 66 <option value="vanilladot">Linear</option> | 66 <option value="vanilladot">Linear</option> |
| 71 <option value="splinedot">Spline</option> | 71 <option value="splinedot">Spline</option> |
| 72 </param> | 72 </param> |
| 73 <when value="vanilladot" /> | 73 <when value="vanilladot" /> |
| 74 <when value="splinedot" /> | 74 <when value="splinedot" /> |
| 75 <when value="rbfdot"> | 75 <when value="rbfdot"> |
| 76 <param name="sigma" size="10" type="float" value="1" label="sigma (inverse kernel width)" /> | 76 <param name="sigma" type="float" value="1" label="sigma (inverse kernel width)" /> |
| 77 </when> | 77 </when> |
| 78 <when value="laplacedot"> | 78 <when value="laplacedot"> |
| 79 <param name="sigma" size="10" type="float" value="1" label="sigma (inverse kernel width)" /> | 79 <param name="sigma" type="float" value="1" label="sigma (inverse kernel width)" /> |
| 80 </when> | 80 </when> |
| 81 <when value="polydot"> | 81 <when value="polydot"> |
| 82 <param name="degree" size="10" type="integer" value="1" label="degree" /> | 82 <param name="degree" type="integer" value="1" label="degree" /> |
| 83 <param name="scale" size="10" type="integer" value="1" label="scale" /> | 83 <param name="scale" type="integer" value="1" label="scale" /> |
| 84 <param name="offset" size="10" type="integer" value="1" label="offset" /> | 84 <param name="offset" type="integer" value="1" label="offset" /> |
| 85 </when> | 85 </when> |
| 86 <when value="tanhdot"> | 86 <when value="tanhdot"> |
| 87 <param name="scale" size="10" type="integer" value="1" label="scale" /> | 87 <param name="scale" type="integer" value="1" label="scale" /> |
| 88 <param name="offset" size="10" type="integer" value="1" label="offset" /> | 88 <param name="offset" type="integer" value="1" label="offset" /> |
| 89 </when> | 89 </when> |
| 90 <when value="besseldot"> | 90 <when value="besseldot"> |
| 91 <param name="sigma" size="10" type="integer" value="1" label="sigma" /> | 91 <param name="sigma" type="integer" value="1" label="sigma" /> |
| 92 <param name="order" size="10" type="integer" value="1" label="order" /> | 92 <param name="order" type="integer" value="1" label="order" /> |
| 93 <param name="degree" size="10" type="integer" value="1" label="degree" /> | 93 <param name="degree" type="integer" value="1" label="degree" /> |
| 94 </when> | 94 </when> |
| 95 <when value="anovadot"> | 95 <when value="anovadot"> |
| 96 <param name="sigma" size="10" type="integer" value="1" label="sigma" /> | 96 <param name="sigma" type="integer" value="1" label="sigma" /> |
| 97 <param name="degree" size="10" type="integer" value="1" label="degree" /> | 97 <param name="degree" type="integer" value="1" label="degree" /> |
| 98 </when> | 98 </when> |
| 99 </conditional> | 99 </conditional> |
| 100 </inputs> | 100 </inputs> |
| 101 <outputs> | 101 <outputs> |
| 102 <data format="input" name="out_file1" metadata_source="input1" /> | 102 <data format="input" name="out_file1" metadata_source="input1" /> |