Mercurial > repos > devteam > kernel_principal_component_analysis

changeset 1:3d58aa83e4a3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/kernel_principal_component_analysis commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:17:56 -0500
parents e9ebd4bfbdfc
children
files kpca.xml tool_dependencies.xml
diffstat 2 files changed, 18 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/kpca.xml	Mon May 19 12:34:31 2014 -0400
+++ b/kpca.xml	Wed Nov 11 12:17:56 2015 -0500
@@ -58,7 +58,7 @@
     <param name="var_cols" label="Select columns containing input variables " type="data_column" data_ref="input1" numerical="True" multiple="true" >
         <validator type="no_options" message="Please select at least one column."/>
     </param>
-    <param name="features" size="10" type="integer" value="2" label="Number of principal components to return" help="To return all, enter 0"/>
+    <param name="features" type="integer" value="2" label="Number of principal components to return" help="To return all, enter 0"/>
     <conditional name="kernelChoice">
         <param name="kernel" type="select" label="Kernel function">
             <option value="rbfdot" selected="true">Gaussian Radial Basis Function</option>
@@ -73,28 +73,28 @@
         <when value="vanilladot" />
         <when value="splinedot" />
         <when value="rbfdot">
-            <param name="sigma" size="10" type="float" value="1" label="sigma (inverse kernel width)" />
+            <param name="sigma" type="float" value="1" label="sigma (inverse kernel width)" />
         </when>
         <when value="laplacedot">
-            <param name="sigma" size="10" type="float" value="1" label="sigma (inverse kernel width)" />
+            <param name="sigma" type="float" value="1" label="sigma (inverse kernel width)" />
         </when>
         <when value="polydot">
-            <param name="degree" size="10" type="integer" value="1" label="degree" />
-            <param name="scale" size="10" type="integer" value="1" label="scale" />
-            <param name="offset" size="10" type="integer" value="1" label="offset" />
+            <param name="degree" type="integer" value="1" label="degree" />
+            <param name="scale" type="integer" value="1" label="scale" />
+            <param name="offset" type="integer" value="1" label="offset" />
         </when>
         <when value="tanhdot">
-            <param name="scale" size="10" type="integer" value="1" label="scale" />
-            <param name="offset" size="10" type="integer" value="1" label="offset" />
+            <param name="scale" type="integer" value="1" label="scale" />
+            <param name="offset" type="integer" value="1" label="offset" />
         </when>
         <when value="besseldot">
-            <param name="sigma" size="10" type="integer" value="1" label="sigma" />
-            <param name="order" size="10" type="integer" value="1" label="order" />
-            <param name="degree" size="10" type="integer" value="1" label="degree" />
+            <param name="sigma" type="integer" value="1" label="sigma" />
+            <param name="order" type="integer" value="1" label="order" />
+            <param name="degree" type="integer" value="1" label="degree" />
         </when>
         <when value="anovadot">
-            <param name="sigma" size="10" type="integer" value="1" label="sigma" />
-            <param name="degree" size="10" type="integer" value="1" label="degree" />
+            <param name="sigma" type="integer" value="1" label="sigma" />
+            <param name="degree" type="integer" value="1" label="degree" />
         </when>
     </conditional>    
   </inputs>
--- a/tool_dependencies.xml	Mon May 19 12:34:31 2014 -0400
+++ b/tool_dependencies.xml	Wed Nov 11 12:17:56 2015 -0500
@@ -1,18 +1,18 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="rpy" version="1.0.3">
-      <repository changeset_revision="82170c94ca7c" name="package_rpy_1_0_3" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="82170c94ca7c" name="package_rpy_1_0_3" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="R" version="2.11.0">
-      <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="numpy" version="1.7.1">
-      <repository changeset_revision="0c288abd2a1e" name="package_numpy_1_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="0c288abd2a1e" name="package_numpy_1_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="bx-python" version="0.7.1">
-      <repository changeset_revision="2d0c08728bca" name="package_bx_python_0_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="2d0c08728bca" name="package_bx_python_0_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="kernlab" version="0.1-4">
-      <repository changeset_revision="ea1da94c31c2" name="package_cran_kernlab_0_1_4" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="ea1da94c31c2" name="package_cran_kernlab_0_1_4" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>