Mercurial > repos > devteam > kraken
annotate tool-data/kraken_databases.loc.sample @ 9:aec58624706f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
author | iuc |
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date | Wed, 04 Dec 2019 06:51:45 -0500 |
parents | 8ba2174315aa |
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rev | line source |
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8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
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0
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changeset
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1 # Expect three columns, tab separated, as follows: |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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2 # - value (Galaxy records this in the Galaxy DB) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
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0
diff
changeset
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3 # - name (Galaxy shows this in the UI) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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4 # - path (folder name containing the Kraken DB) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
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0
diff
changeset
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5 # |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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6 # e.g. |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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7 # plants2018<tab>Plant genomes (2018)<tab>/path/to/krakenDB/plants_2018 |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
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0
diff
changeset
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8 # |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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9 # For backward compatibility the Kraken wrapper also accepts: |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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10 # - value (Galaxy records this in the Galaxy DB) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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11 # - name (Final part of folder name, Galaxy shows this in the UI) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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12 # - path (Parent folder name, where $path/$name contains the Kraken DB) |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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13 # |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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14 # e.g. |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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15 # plants2018<tab>plants_2018<tab>/path/to/krakenDB |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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16 # |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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17 # Please avoid this legacy usage, as not all tools using |
8ba2174315aa
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken/ commit 87dfa1af2f1dd57ffc7290b66218a127cec6757f
iuc
parents:
0
diff
changeset
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18 # the kraken_databases.loc file will understand it. |