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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit 1075d38f2a8eaffb824771a5c4fe70c36aa15f2c
author iuc
date Sun, 02 Jul 2023 12:10:46 +0000
parents bd84ff27bc16
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
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1 # (a LASTZ scoring set, created by "LASTZ --infer")
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
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2
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
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diff changeset
3 bad_score = X:-1781 # used for sub[X][*] and sub[*][X]
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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4 fill_score = -178 # used when sub[*][*] not otherwise defined
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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5 gap_open_penalty = 400
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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6 gap_extend_penalty = 30
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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8 A C G T
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
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9 A 72 -79 -49 -97
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
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10 C -79 100 -178 -49
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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11 G -49 -178 100 -79
bd84ff27bc16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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12 T -97 -49 -79 72