comparison lastz_d.xml @ 11:37b497aa133f draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit 1075d38f2a8eaffb824771a5c4fe70c36aa15f2c

10:3e1ea2facca6

        <expand macro="target_input"/>
        <param name="query" format="fasta,fastq,fasta.gz,fastq.gz,fastq.bz2" type="data" label="Select QUERY sequence(s)" help="These are the sequences that you are aligning against TARGET"/>
        <param name="score_file" type="data" format="txt" optional="true" label="Control file for inference" argument="--inferonly[=control_file]" help="Optional controf file. If nothing is selected, LASTZ_D uses default described in the manual"/>
     </inputs>
    <outputs>
        <data format="txt" name="output" label="${tool.name} on ${on_string}: substituion matrix"/>
    </outputs>
    <tests>
        <test>
            <param name="ref_source" value="history" />
            <param name="target" value="chrM_human.fa" />

11:37b497aa133f

        <expand macro="target_input"/>
        <param name="query" format="fasta,fastq,fasta.gz,fastq.gz,fastq.bz2" type="data" label="Select QUERY sequence(s)" help="These are the sequences that you are aligning against TARGET"/>
        <param name="score_file" type="data" format="txt" optional="true" label="Control file for inference" argument="--inferonly[=control_file]" help="Optional controf file. If nothing is selected, LASTZ_D uses default described in the manual"/>
     </inputs>
    <outputs>
        <data format="txt" name="output" label="${tool.name} on ${on_string}: substitution matrix"/>
    </outputs>
    <tests>
        <test>
            <param name="ref_source" value="history" />
            <param name="target" value="chrM_human.fa" />