comparison tool_dependencies.xml @ 3:d054d95585b1 draft

Uploaded a tool dependency definition that defines a complex repository dependency on package_lastz_1_02_00.

2:12d4359b7e2f

<?xml version="1.0"?>
<tool_dependency>
    <package name="lastz" version="1.02.00">
        <install version="1.0">
            <actions>
                <action type="download_by_url" target_filename="lastz-distrib-1.02.00.tar.gz">http://www.bx.psu.edu/miller_lab/dist/lastz-1.02.00.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>src/lastz</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>src/lastz_D</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.
        </readme>
    </package>
</tool_dependency>

3:d054d95585b1

<?xml version="1.0"?>
<tool_dependency>
    <package name="lastz" version="1.02.00">
        <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>