comparison tool_dependencies.xml @ 3:d054d95585b1 draft

Uploaded a tool dependency definition that defines a complex repository dependency on package_lastz_1_02_00.
author devteam
date Fri, 21 Feb 2014 14:25:04 -0500
parents 0801f8207d30
children 60afcc2c1d05
comparison
equal deleted inserted replaced
2:12d4359b7e2f 3:d054d95585b1
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="lastz" version="1.02.00"> 3 <package name="lastz" version="1.02.00">
4 <install version="1.0"> 4 <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
5 <actions>
6 <action type="download_by_url" target_filename="lastz-distrib-1.02.00.tar.gz">http://www.bx.psu.edu/miller_lab/dist/lastz-1.02.00.tar.gz</action>
7 <action type="shell_command">make</action>
8 <action type="move_file">
9 <source>src/lastz</source>
10 <destination>$INSTALL_DIR/bin</destination>
11 </action>
12 <action type="move_file">
13 <source>src/lastz_D</source>
14 <destination>$INSTALL_DIR/bin</destination>
15 </action>
16 <action type="set_environment">
17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
18 </action>
19 </actions>
20 </install>
21 <readme>
22 LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.
23 </readme>
24 </package> 5 </package>
25 </tool_dependency> 6 </tool_dependency>
26