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diff test-data/score_file.txt @ 5:bd84ff27bc16 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
author devteam
date Mon, 26 Feb 2018 15:37:53 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/score_file.txt	Mon Feb 26 15:37:53 2018 -0500
@@ -0,0 +1,12 @@
+# This matches the default scoring set for BLASTZ
+    
+bad_score          = X:-1000  # used for sub['X'][*] and sub[*]['X']
+fill_score         = -100     # used when sub[*][*] is not defined
+gap_open_penalty   =  400
+gap_extend_penalty =   30
+
+     A     C     G     T
+A   91  -114   -31  -123
+C -114   100  -125   -31
+G  -31  -125   100  -114
+T -123   -31  -114    91