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view tool_dependencies.xml @ 2:12d4359b7e2f draft

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Updated command line format per dev team standards.
author Dave B. <dave@bx.psu.edu>
date Mon, 01 Apr 2013 15:24:44 -0400
parents 0801f8207d30
children d054d95585b1
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="lastz" version="1.02.00">
        <install version="1.0">
            <actions>
                <action type="download_by_url" target_filename="lastz-distrib-1.02.00.tar.gz">http://www.bx.psu.edu/miller_lab/dist/lastz-1.02.00.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>src/lastz</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>src/lastz_D</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.
        </readme>
    </package>
</tool_dependency>