Mercurial > repos > devteam > lastz
view lastz_macros.xml @ 5:bd84ff27bc16 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
author | devteam |
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date | Mon, 26 Feb 2018 15:37:53 -0500 |
parents | |
children | b6d7308c3728 |
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<macros> <token name="@LASTZ_CONDA_VERSION@">1.0.4</token> <token name="@TARGET_INPUT_COMMAND_LINE@"> #if $source.ref_source=="history": '${source.target}' #else: '${source.target_2bit.fields.path}' #end if </token> <xml name="target_input"> <conditional name="source"> <param name="ref_source" type="select" label="Select TARGET sequnce(s) to align against" help="If your TARGET is in history, choose 'from your history' option"> <option value="cached">locally cached</option> <option value="history">from your history</option> </param> <when value="cached"> <param name="target_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> <options from_data_table="lastz_seqs" /> </param> </when> <when value="history"> <param name="target" type="data" format="fasta,fasta.gz" label="Select a reference dataset" /> </when> </conditional> </xml> <xml name="citations"> <citations> <citation type="bibtex"> @misc{ githublastz, author = {Harris, Robert}, year = {2007}, title = {Improved pairwise alignment of genomic DNA}, publisher = {The Pennsylvania State University}, journal = {Ph. D. Thesis}, url = {http://www.bx.psu.edu/~rsharris/rsharris_phd_thesis_2007.pdf}, } </citation> </citations> </xml> </macros>