# HG changeset patch
# User devteam
# Date 1580916503 18000
# Node ID e5f3bfba6812c66c03d8055fb9d460313d60f4c9
# Parent f6319b0b43915da70823c4a1ae457a4bdd9e88e3
"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/macs commit 206cd8245e7619b0e924c5066d0172129222993d"
diff -r f6319b0b4391 -r e5f3bfba6812 macs_wrapper.py
--- a/macs_wrapper.py Wed Nov 11 12:19:24 2015 -0500
+++ b/macs_wrapper.py Wed Feb 05 10:28:23 2020 -0500
@@ -122,14 +122,14 @@
os.rmdir( wig_base_dir )
#move all remaining files to extra files path of html file output to allow user download
- out_html = open( output_extra_html, 'wb' )
+ out_html = open( output_extra_html, 'w' )
out_html.write( 'Additional output created by MACS (%s)Additional Files:
\n' % experiment_name )
os.mkdir( output_extra_path )
for filename in sorted( os.listdir( tmp_dir ) ):
shutil.move( os.path.join( tmp_dir, filename ), os.path.join( output_extra_path, filename ) )
out_html.write( '- %s
\n' % ( filename, filename ) )
out_html.write( '
\n' )
- out_html.write( 'Messages from MACS:
\n%s
\n' % open( stderr_name, 'rb' ).read() )
+ out_html.write( 'Messages from MACS:
\n%s
\n' % open( stderr_name, 'r' ).read() )
out_html.write( '\n' )
out_html.close()
diff -r f6319b0b4391 -r e5f3bfba6812 macs_wrapper.xml
--- a/macs_wrapper.xml Wed Nov 11 12:19:24 2015 -0500
+++ b/macs_wrapper.xml Wed Feb 05 10:28:23 2020 -0500
@@ -1,6 +1,7 @@
-
+
Model-based Analysis of ChIP-Seq
- macs_wrapper.py $options_file $output_bed_file $output_extra_files $output_extra_files.files_path
+
+ python '$__tool_directory__/macs_wrapper.py' '$options_file' '$output_bed_file' '$output_extra_files' '$output_extra_files.files_path'
macs
R
diff -r f6319b0b4391 -r e5f3bfba6812 tool_dependencies.xml
--- a/tool_dependencies.xml Wed Nov 11 12:19:24 2015 -0500
+++ b/tool_dependencies.xml Wed Feb 05 10:28:23 2020 -0500
@@ -1,9 +1,9 @@
-
+
-
-
+
+
-
+
-
+
\ No newline at end of file