Mercurial > repos > devteam > maf_cpg_filter
comparison maf_cpg_filter.xml @ 1:e5b0c8ca1399 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/maf_cpg_filter commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:19:38 -0500 |
| parents | 7f2a12cb047d |
| children |
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| 0:7f2a12cb047d | 1:e5b0c8ca1399 |
|---|---|
| 16 -m $mask_char | 16 -m $mask_char |
| 17 </command> | 17 </command> |
| 18 <inputs> | 18 <inputs> |
| 19 <page> | 19 <page> |
| 20 <param format="maf" name="input" type="data" label="Select data"/> | 20 <param format="maf" name="input" type="data" label="Select data"/> |
| 21 <param name="mask_char" size="5" type="select" label="Mask character"> | 21 <param name="mask_char" type="select" label="Mask character"> |
| 22 <option value="0" selected="true">#</option> | 22 <option value="0" selected="true">#</option> |
| 23 <option value="1">$</option> | 23 <option value="1">$</option> |
| 24 <option value="2">^</option> | 24 <option value="2">^</option> |
| 25 <option value="3">*</option> | 25 <option value="3">*</option> |
| 26 <option value="4">?</option> | 26 <option value="4">?</option> |
| 27 <option value="5">N</option> | 27 <option value="5">N</option> |
| 28 </param> | 28 </param> |
| 29 <conditional name="masksite"> | 29 <conditional name="masksite"> |
| 30 <param name="type" size="5" type="select" label="Sites to be masked"> | 30 <param name="type" type="select" label="Sites to be masked"> |
| 31 <option value="CpG" selected="true">CpG sites</option> | 31 <option value="CpG" selected="true">CpG sites</option> |
| 32 <option value="nonCpG">non-CpG sites</option> | 32 <option value="nonCpG">non-CpG sites</option> |
| 33 </param> | 33 </param> |
| 34 <when value="CpG"> | 34 <when value="CpG"> |
| 35 <param name="definition" size="5" type="select" label="Definition"> | 35 <param name="definition" type="select" label="Definition"> |
| 36 <option value="0" selected="true">Inclusive</option> | 36 <option value="0" selected="true">Inclusive</option> |
| 37 <option value="1">Restricted</option> | 37 <option value="1">Restricted</option> |
| 38 </param> | 38 </param> |
| 39 </when> | 39 </when> |
| 40 <when value="nonCpG" /> | 40 <when value="nonCpG" /> |