Mercurial > repos > devteam > mapping_to_ucsc
comparison mapping_to_ucsc.xml @ 1:5385aceef9e9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/mapping_to_ucsc commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:20:00 -0500 |
| parents | 601abbd22cea |
| children |
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| 0:601abbd22cea | 1:5385aceef9e9 |
|---|---|
| 30 <option value="coverage">Read coverage</option> | 30 <option value="coverage">Read coverage</option> |
| 31 <option value="both">Both</option> | 31 <option value="both">Both</option> |
| 32 </param> | 32 </param> |
| 33 <when value = "coverage"> | 33 <when value = "coverage"> |
| 34 <param name="coverage_col" type="data_column" data_ref="input" numerical="True" label="Numerical column for read coverage" /> | 34 <param name="coverage_col" type="data_column" data_ref="input" numerical="True" label="Numerical column for read coverage" /> |
| 35 <param name="cname" type="text" size="15" value="User Track" label="Coverage track name"> | 35 <param name="cname" type="text" value="User Track" label="Coverage track name"> |
| 36 <validator type="length" max="15"/> | 36 <validator type="length" max="15"/> |
| 37 </param> | 37 </param> |
| 38 <param name="cdescription" type="text" value="User Supplied Coverage Track (from Galaxy)" label="Coverage track description"> | 38 <param name="cdescription" type="text" value="User Supplied Coverage Track (from Galaxy)" label="Coverage track description"> |
| 39 <validator type="length" max="60" size="15"/> | 39 <validator type="length" max="60"/> |
| 40 </param> | 40 </param> |
| 41 <param label="Coverage track Color" name="ccolor" type="select"> | 41 <param label="Coverage track Color" name="ccolor" type="select"> |
| 42 <option selected="yes" value="0-0-0">Black</option> | 42 <option selected="yes" value="0-0-0">Black</option> |
| 43 <option value="255-0-0">Red</option> | 43 <option value="255-0-0">Red</option> |
| 44 <option value="0-255-0">Green</option> | 44 <option value="0-255-0">Green</option> |
| 65 <!-- | 65 <!-- |
| 66 <param name="col1" type="data_column" data_ref="input" label="Column containing the reference nucleotide" /> | 66 <param name="col1" type="data_column" data_ref="input" label="Column containing the reference nucleotide" /> |
| 67 --> | 67 --> |
| 68 <param name="col2" type="data_column" data_ref="input" label="Column containing the read nucleotide" /> | 68 <param name="col2" type="data_column" data_ref="input" label="Column containing the read nucleotide" /> |
| 69 <!-- | 69 <!-- |
| 70 <param name="sname" type="text" size="15" value="User Track-2" label="SNP track name"> | 70 <param name="sname" type="text" value="User Track-2" label="SNP track name"> |
| 71 <validator type="length" max="15"/> | 71 <validator type="length" max="15"/> |
| 72 </param> | 72 </param> |
| 73 --> | 73 --> |
| 74 <param name="sdescription" type="text" value="User Supplied Track (from Galaxy)" label="SNP track description"> | 74 <param name="sdescription" type="text" value="User Supplied Track (from Galaxy)" label="SNP track description"> |
| 75 <validator type="length" max="60" size="15"/> | 75 <validator type="length" max="60"/> |
| 76 </param> | 76 </param> |
| 77 <param label="SNP track Visibility" name="svisibility" type="select"> | 77 <param label="SNP track Visibility" name="svisibility" type="select"> |
| 78 <option selected="yes" value="1">Dense</option> | 78 <option selected="yes" value="1">Dense</option> |
| 79 <option value="2">Full</option> | 79 <option value="2">Full</option> |
| 80 <option value="3">Pack</option> | 80 <option value="3">Pack</option> |
| 83 </param> | 83 </param> |
| 84 </when> | 84 </when> |
| 85 | 85 |
| 86 <when value = "both"> | 86 <when value = "both"> |
| 87 <param name="coverage_col" type="data_column" data_ref="input" numerical="True" label="Numerical column for read coverage" /> | 87 <param name="coverage_col" type="data_column" data_ref="input" numerical="True" label="Numerical column for read coverage" /> |
| 88 <param name="cname" type="text" size="15" value="User Track" label="Coverage track name"> | 88 <param name="cname" type="text" value="User Track" label="Coverage track name"> |
| 89 <validator type="length" max="15"/> | 89 <validator type="length" max="15"/> |
| 90 </param> | 90 </param> |
| 91 <param name="cdescription" type="text" size="15" value="User Supplied Track (from Galaxy)" label="Coverage track description"> | 91 <param name="cdescription" type="text" value="User Supplied Track (from Galaxy)" label="Coverage track description"> |
| 92 <validator type="length" max="60"/> | 92 <validator type="length" max="60"/> |
| 93 </param> | 93 </param> |
| 94 <param label="Coverage track Color" name="ccolor" type="select"> | 94 <param label="Coverage track Color" name="ccolor" type="select"> |
| 95 <option selected="yes" value="0-0-0">Black</option> | 95 <option selected="yes" value="0-0-0">Black</option> |
| 96 <option value="255-0-0">Red</option> | 96 <option value="255-0-0">Red</option> |
| 115 <!-- | 115 <!-- |
| 116 <param name="col1" type="data_column" data_ref="input" label="Column containing the reference nucleotide" /> | 116 <param name="col1" type="data_column" data_ref="input" label="Column containing the reference nucleotide" /> |
| 117 --> | 117 --> |
| 118 <param name="col2" type="data_column" data_ref="input" label="Column containing the read nucleotide" /> | 118 <param name="col2" type="data_column" data_ref="input" label="Column containing the read nucleotide" /> |
| 119 <!-- | 119 <!-- |
| 120 <param name="sname" type="text" size="15" value="User Track-2" label="SNP track name"> | 120 <param name="sname" type="text" value="User Track-2" label="SNP track name"> |
| 121 <validator type="length" max="15"/> | 121 <validator type="length" max="15"/> |
| 122 </param> | 122 </param> |
| 123 --> | 123 --> |
| 124 <param name="sdescription" type="text" size="15" value="User Supplied Track (from Galaxy)" label="SNP track description"> | 124 <param name="sdescription" type="text" value="User Supplied Track (from Galaxy)" label="SNP track description"> |
| 125 <validator type="length" max="60"/> | 125 <validator type="length" max="60"/> |
| 126 </param> | 126 </param> |
| 127 <param label="SNP track Visibility" name="svisibility" type="select"> | 127 <param label="SNP track Visibility" name="svisibility" type="select"> |
| 128 <option selected="yes" value="1">Dense</option> | 128 <option selected="yes" value="1">Dense</option> |
| 129 <option value="2">Full</option> | 129 <option value="2">Full</option> |