Mercurial > repos > devteam > microsats_alignment_level
comparison microsats_alignment_level.py @ 2:ad471b193191
Fix blank results when running on NFS.
| author | Dave Bouvier <dave@bx.psu.edu> |
|---|---|
| date | Fri, 16 Jan 2015 14:51:32 -0500 |
| parents | d4368a5a3fc7 |
| children | df7548445f4e |
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| 1:7852385470f3 | 2:ad471b193191 |
|---|---|
| 40 for block in input.split('\n\n'): | 40 for block in input.split('\n\n'): |
| 41 block_num += 1 | 41 block_num += 1 |
| 42 tmpin = tempfile.NamedTemporaryFile() | 42 tmpin = tempfile.NamedTemporaryFile() |
| 43 tmpout = tempfile.NamedTemporaryFile() | 43 tmpout = tempfile.NamedTemporaryFile() |
| 44 tmpin.write(block.strip()) | 44 tmpin.write(block.strip()) |
| 45 tmpin.flush() | |
| 45 cmdline = sputnik_cmd + " " + tmpin.name + " > /dev/null 2>&1 >> " + tmpout.name | 46 cmdline = sputnik_cmd + " " + tmpin.name + " > /dev/null 2>&1 >> " + tmpout.name |
| 46 try: | 47 try: |
| 47 os.system(cmdline) | 48 os.system(cmdline) |
| 48 except Exception: | 49 except Exception: |
| 49 continue | 50 continue |