annotate test-data/rhodopsin_proteins.fasta @ 11:4c4a0da938ff draft

Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. Supports $GALAXY_SLOTS. Includes more tests and heavy use of macros.
author peterjc
date Thu, 05 Dec 2013 06:55:59 -0500
parents d375502056f1
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
1 >gi|57163783|ref|NP_001009242.1| rhodopsin [Felis catus]
d375502056f1 Uploaded
devteam
parents:
diff changeset
2 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
d375502056f1 Uploaded
devteam
parents:
diff changeset
3 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC
d375502056f1 Uploaded
devteam
parents:
diff changeset
4 KPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVV
d375502056f1 Uploaded
devteam
parents:
diff changeset
5 HFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQG
d375502056f1 Uploaded
devteam
parents:
diff changeset
6 SNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA
d375502056f1 Uploaded
devteam
parents:
diff changeset
7
d375502056f1 Uploaded
devteam
parents:
diff changeset
8 >gi|3024260|sp|P56514.1|OPSD_BUFBU RecName: Full=Rhodopsin
d375502056f1 Uploaded
devteam
parents:
diff changeset
9 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRT
d375502056f1 Uploaded
devteam
parents:
diff changeset
10 PLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVC
d375502056f1 Uploaded
devteam
parents:
diff changeset
11 KPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVV
d375502056f1 Uploaded
devteam
parents:
diff changeset
12 HFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQG
d375502056f1 Uploaded
devteam
parents:
diff changeset
13 SEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTEASSVSSSQ
d375502056f1 Uploaded
devteam
parents:
diff changeset
14 VSPA
d375502056f1 Uploaded
devteam
parents:
diff changeset
15
d375502056f1 Uploaded
devteam
parents:
diff changeset
16 >gi|283855846|gb|ADB45242.1| rhodopsin [Cynopterus brachyotis]
d375502056f1 Uploaded
devteam
parents:
diff changeset
17 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
d375502056f1 Uploaded
devteam
parents:
diff changeset
18 VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE
d375502056f1 Uploaded
devteam
parents:
diff changeset
19 NHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIF
d375502056f1 Uploaded
devteam
parents:
diff changeset
20 FCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTL
d375502056f1 Uploaded
devteam
parents:
diff changeset
21 PAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS
d375502056f1 Uploaded
devteam
parents:
diff changeset
22
d375502056f1 Uploaded
devteam
parents:
diff changeset
23 >gi|283855823|gb|ADB45229.1| rhodopsin [Myotis pilosus]
d375502056f1 Uploaded
devteam
parents:
diff changeset
24 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
d375502056f1 Uploaded
devteam
parents:
diff changeset
25 VANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE
d375502056f1 Uploaded
devteam
parents:
diff changeset
26 NHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIF
d375502056f1 Uploaded
devteam
parents:
diff changeset
27 FCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTI
d375502056f1 Uploaded
devteam
parents:
diff changeset
28 PAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS
d375502056f1 Uploaded
devteam
parents:
diff changeset
29
d375502056f1 Uploaded
devteam
parents:
diff changeset
30 >gi|223523|prf||0811197A rhodopsin [Bos taurus]
d375502056f1 Uploaded
devteam
parents:
diff changeset
31 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRT
d375502056f1 Uploaded
devteam
parents:
diff changeset
32 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC
d375502056f1 Uploaded
devteam
parents:
diff changeset
33 KPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYTPHEETNNESFVIYMFVVH
d375502056f1 Uploaded
devteam
parents:
diff changeset
34 FIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS
d375502056f1 Uploaded
devteam
parents:
diff changeset
35 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
d375502056f1 Uploaded
devteam
parents:
diff changeset
36
d375502056f1 Uploaded
devteam
parents:
diff changeset
37 >gi|12583665|dbj|BAB21486.1| fresh water form rod opsin [Conger myriaster]
d375502056f1 Uploaded
devteam
parents:
diff changeset
38 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRT
d375502056f1 Uploaded
devteam
parents:
diff changeset
39 PLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVC
d375502056f1 Uploaded
devteam
parents:
diff changeset
40 KPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTC
d375502056f1 Uploaded
devteam
parents:
diff changeset
41 HFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQG
d375502056f1 Uploaded
devteam
parents:
diff changeset
42 STFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTEASSVSSSS
d375502056f1 Uploaded
devteam
parents:
diff changeset
43 VSPA