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annotate test-data/tblastn_four_human_vs_rhodopsin.html @ 22:6f386c5dc4fb draft

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v0.2.01 add -max_hsps, -use_sw_tback; lists args; internal updates
author peterjc
date Mon, 18 Sep 2017 06:21:27 -0400
parents 7538e2bfcd41
children 31e517610e1f
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1 <HTML>
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2 <TITLE>BLAST Search Results</TITLE>
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3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
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4 <PRE>
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6 <b>TBLASTN 2.5.0+</b>
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9 <b><a
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10 href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=R
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11 etrieve&list_uids=9254694&dopt=Citation">Reference</a>:</b>
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12 Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer,
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13 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
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14 "Gapped BLAST and PSI-BLAST: a new generation of protein database
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15 search programs", Nucleic Acids Res. 25:3389-3402.
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19 Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
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20 6 sequences; 10,296 total letters
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24 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
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25 OS=Homo sapiens GN=ERP44 PE=1 SV=1
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27 Length=406
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30 ***** No hits found *****
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34 Lambda K H a alpha
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35 0.347 0.182 0.684 0.522 1.92
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37 Gapped
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38 Lambda K H a alpha sigma
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39 0.299 0.0710 0.270 1.10 13.8 14.5
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41 Effective search space used: 1239330
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44 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
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45 GN=BMP2K PE=1 SV=2
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47 Length=1161
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50 ***** No hits found *****
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54 Lambda K H a alpha
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55 0.334 0.170 0.615 0.522 1.92
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57 Gapped
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58 Lambda K H a alpha sigma
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59 0.299 0.0710 0.270 1.10 13.8 14.5
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61 Effective search space used: 3667980
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64 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
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65 SV=4
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67 Length=1382
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70 ***** No hits found *****
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74 Lambda K H a alpha
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75 0.346 0.180 0.700 0.522 1.92
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77 Gapped
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78 Lambda K H a alpha sigma
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79 0.299 0.0710 0.270 1.10 13.8 14.5
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81 Effective search space used: 4374000
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84 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
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85
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86 Length=348
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87 Score E
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88 Sequences producing significant alignments: (Bits) Value
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90 gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA <a href=#Subject_1>732</a> 0.0
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91 gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene... <a href=#Subject_5>711</a> 0.0
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92 gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodo... <a href=#Subject_4>658</a> 0.0
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93 gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, compl... <a href=#Subject_2>646</a> 0.0
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94 gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fres... <a href=#Subject_6>626</a> 0.0
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95 gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020... <a href=#Subject_3>151</a> 1e-71
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96
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97
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98 ><a name=Subject_1></a> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO),
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99 mRNA
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100 Length=1047
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101
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102 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
0
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103 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
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104 Frame = +1
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105
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106 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
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107 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
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108 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180
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109
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110 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
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111 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
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112 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
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114 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
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115 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
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116 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
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117
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118 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
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119 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES
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120 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720
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121
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122 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
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123 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I
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124 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900
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125
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126 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
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127 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
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128 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
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129
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130
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131 ><a name=Subject_5></a> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene
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132 for rhodopsin, complete cds
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133 Length=1047
0
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134
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135 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
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136 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
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137 Frame = +1
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138
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139 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
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140 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
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141 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
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142
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143 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
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144 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
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145 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360
0
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147 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
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148 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
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149 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540
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150
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151 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
152 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
153 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
154
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
155 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
156 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
157 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
158
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
159 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
160 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
161 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
162
d375502056f1 Uploaded
devteam
parents:
diff changeset
163
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
164 ><a name=Subject_4></a> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
165 (RHO) mRNA, partial cds
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
166 Length=983
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
167
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
168 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
169 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
170 Frame = +1
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
171
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
172 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
173 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
174 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
175
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
176 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
177 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
178 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
179
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
180 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
181 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
182 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
183
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
184 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
185 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
186 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
187
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
188 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
189 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
190 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
191
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
192 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
193 KQFRNCMLTT+CCGKNPLGDDEAS T
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
194 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
195
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
196
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
197 ><a name=Subject_2></a> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
198 cds
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
199 Length=1574
d375502056f1 Uploaded
devteam
parents:
diff changeset
200
18
577d9c12411a v0.1.06, now using BLAST+ 2.2.31
peterjc
parents: 15
diff changeset
201 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust.
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
202 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
d375502056f1 Uploaded
devteam
parents:
diff changeset
203 Frame = +3
d375502056f1 Uploaded
devteam
parents:
diff changeset
204
d375502056f1 Uploaded
devteam
parents:
diff changeset
205 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded
devteam
parents:
diff changeset
206 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY
d375502056f1 Uploaded
devteam
parents:
diff changeset
207 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221
d375502056f1 Uploaded
devteam
parents:
diff changeset
208
d375502056f1 Uploaded
devteam
parents:
diff changeset
209 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded
devteam
parents:
diff changeset
210 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG
d375502056f1 Uploaded
devteam
parents:
diff changeset
211 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401
d375502056f1 Uploaded
devteam
parents:
diff changeset
212
d375502056f1 Uploaded
devteam
parents:
diff changeset
213 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
214 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP
d375502056f1 Uploaded
devteam
parents:
diff changeset
215 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581
d375502056f1 Uploaded
devteam
parents:
diff changeset
216
d375502056f1 Uploaded
devteam
parents:
diff changeset
217 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded
devteam
parents:
diff changeset
218 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES
d375502056f1 Uploaded
devteam
parents:
diff changeset
219 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761
d375502056f1 Uploaded
devteam
parents:
diff changeset
220
d375502056f1 Uploaded
devteam
parents:
diff changeset
221 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded
devteam
parents:
diff changeset
222 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I
d375502056f1 Uploaded
devteam
parents:
diff changeset
223 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941
d375502056f1 Uploaded
devteam
parents:
diff changeset
224
d375502056f1 Uploaded
devteam
parents:
diff changeset
225 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341
d375502056f1 Uploaded
devteam
parents:
diff changeset
226 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
d375502056f1 Uploaded
devteam
parents:
diff changeset
227 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
d375502056f1 Uploaded
devteam
parents:
diff changeset
228
d375502056f1 Uploaded
devteam
parents:
diff changeset
229
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
230 ><a name=Subject_6></a> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
231 water form rod opsin, complete cds
d375502056f1 Uploaded
devteam
parents:
diff changeset
232 Length=1344
d375502056f1 Uploaded
devteam
parents:
diff changeset
233
18
577d9c12411a v0.1.06, now using BLAST+ 2.2.31
peterjc
parents: 15
diff changeset
234 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
8
1f546099212f Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
peterjc
parents: 0
diff changeset
235 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
236 Frame = +2
d375502056f1 Uploaded
devteam
parents:
diff changeset
237
d375502056f1 Uploaded
devteam
parents:
diff changeset
238 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
d375502056f1 Uploaded
devteam
parents:
diff changeset
239 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
d375502056f1 Uploaded
devteam
parents:
diff changeset
240 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202
d375502056f1 Uploaded
devteam
parents:
diff changeset
241
d375502056f1 Uploaded
devteam
parents:
diff changeset
242 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120
d375502056f1 Uploaded
devteam
parents:
diff changeset
243 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG
d375502056f1 Uploaded
devteam
parents:
diff changeset
244 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382
d375502056f1 Uploaded
devteam
parents:
diff changeset
245
d375502056f1 Uploaded
devteam
parents:
diff changeset
246 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180
d375502056f1 Uploaded
devteam
parents:
diff changeset
247 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP
d375502056f1 Uploaded
devteam
parents:
diff changeset
248 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562
d375502056f1 Uploaded
devteam
parents:
diff changeset
249
d375502056f1 Uploaded
devteam
parents:
diff changeset
250 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240
d375502056f1 Uploaded
devteam
parents:
diff changeset
251 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES
d375502056f1 Uploaded
devteam
parents:
diff changeset
252 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742
d375502056f1 Uploaded
devteam
parents:
diff changeset
253
d375502056f1 Uploaded
devteam
parents:
diff changeset
254 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300
d375502056f1 Uploaded
devteam
parents:
diff changeset
255 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+
d375502056f1 Uploaded
devteam
parents:
diff changeset
256 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922
d375502056f1 Uploaded
devteam
parents:
diff changeset
257
d375502056f1 Uploaded
devteam
parents:
diff changeset
258 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341
d375502056f1 Uploaded
devteam
parents:
diff changeset
259 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
d375502056f1 Uploaded
devteam
parents:
diff changeset
260 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
d375502056f1 Uploaded
devteam
parents:
diff changeset
261
d375502056f1 Uploaded
devteam
parents:
diff changeset
262
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
263 ><a name=Subject_3></a> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
264 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
265 Length=4301
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
266
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
267 Score = 151 bits (342), Expect(2) = 1e-71, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
268 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
269 Frame = +3
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
270
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
271 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
272 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
273 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
274
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
275 Query 299 AIYNPVIYIMMNKQ 312
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
276 +IYNPVIYIMMNKQ
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
277 Sbjct 3327 SIYNPVIYIMMNKQ 3368
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
278
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
279
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
280 Score = 126 bits (284), Expect(2) = 1e-71, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
281 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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282 Frame = +2
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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283
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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284 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
285 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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286 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
287
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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288
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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289 Score = 229 bits (523), Expect = 3e-67, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
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parents: 18
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290 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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291 Frame = +1
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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292
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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293 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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294 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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295 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
296
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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297 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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298 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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299 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
300
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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301
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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302 Score = 122 bits (276), Expect = 2e-32, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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303 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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304 Frame = +3
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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305
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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306 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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307 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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308 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
diff changeset
309
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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310
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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311 Score = 57.7 bits (125), Expect = 4e-12, Method: Compositional matrix adjust.
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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312 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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313 Frame = +1
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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314
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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315 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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316 QFRNCMLTT+CCGKNPLGDDEAS T
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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317 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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318
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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319
0
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320
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
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321 Lambda K H a alpha
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
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322 0.351 0.182 0.707 0.522 1.92
0
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323
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324 Gapped
11
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
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325 Lambda K H a alpha sigma
4c4a0da938ff Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
peterjc
parents: 8
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326 0.299 0.0710 0.270 1.10 13.8 14.5
0
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327
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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328 Effective search space used: 1049670
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
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parents: 18
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329
0
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330
21
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
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parents: 18
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331 Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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332 Posted date: Unknown
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
peterjc
parents: 18
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333 Number of letters in database: 10,296
7538e2bfcd41 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
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parents: 18
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334 Number of sequences in database: 6
0
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335
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336
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337
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338 Matrix: BLOSUM80
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339 Gap Penalties: Existence: 10, Extension: 1
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340 Neighboring words threshold: 14
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341 Window for multiple hits: 25
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342 </PRE>
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343 </BODY>
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344 </HTML>