annotate blastdb_p.loc.sample @ 2:ab1a8640f817 draft

Uploaded v0.0.12 again, without extra path
author peterjc
date Thu, 23 Aug 2012 07:32:06 -0400
parents d375502056f1
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d375502056f1 Uploaded
devteam
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that is used to define a
d375502056f1 Uploaded
devteam
parents:
diff changeset
2 #list of protein BLAST databases, using three columns tab separated
d375502056f1 Uploaded
devteam
parents:
diff changeset
3 #(longer whitespace are TAB characters):
d375502056f1 Uploaded
devteam
parents:
diff changeset
4 #
d375502056f1 Uploaded
devteam
parents:
diff changeset
5 #<unique_id> <database_caption> <base_name_path>
d375502056f1 Uploaded
devteam
parents:
diff changeset
6 #
d375502056f1 Uploaded
devteam
parents:
diff changeset
7 #The captions typically contain spaces and might end with the build date.
d375502056f1 Uploaded
devteam
parents:
diff changeset
8 #It is important that the actual database name does not have a space in it,
d375502056f1 Uploaded
devteam
parents:
diff changeset
9 #and that the first tab that appears in the line is right before the path.
d375502056f1 Uploaded
devteam
parents:
diff changeset
10 #
d375502056f1 Uploaded
devteam
parents:
diff changeset
11 #So, for example, if your database is NR and the path to your base name
d375502056f1 Uploaded
devteam
parents:
diff changeset
12 #is /data/blastdb/nr, then the blastdb_p.loc entry would look like this:
d375502056f1 Uploaded
devteam
parents:
diff changeset
13 #
d375502056f1 Uploaded
devteam
parents:
diff changeset
14 #nr NCBI NR (non redundant) /data/blastdb/nr
d375502056f1 Uploaded
devteam
parents:
diff changeset
15 #
d375502056f1 Uploaded
devteam
parents:
diff changeset
16 #and your /data/blastdb directory would contain all of the files associated
d375502056f1 Uploaded
devteam
parents:
diff changeset
17 #with the database, /data/blastdb/nr.*.
d375502056f1 Uploaded
devteam
parents:
diff changeset
18 #
d375502056f1 Uploaded
devteam
parents:
diff changeset
19 #Your blastdb_p.loc file should include an entry per line for each "base name"
d375502056f1 Uploaded
devteam
parents:
diff changeset
20 #you have stored. For example:
d375502056f1 Uploaded
devteam
parents:
diff changeset
21 #
d375502056f1 Uploaded
devteam
parents:
diff changeset
22 #nr_05Jun2010 NCBI NR (non redundant) 05 Jun 2010 /data/blastdb/05Jun2010/nr
d375502056f1 Uploaded
devteam
parents:
diff changeset
23 #nr_15Aug2010 NCBI NR (non redundant) 15 Aug 2010 /data/blastdb/15Aug2010/nr
d375502056f1 Uploaded
devteam
parents:
diff changeset
24 #...etc...
d375502056f1 Uploaded
devteam
parents:
diff changeset
25 #
d375502056f1 Uploaded
devteam
parents:
diff changeset
26 #See also blastdb.loc which is for any nucleotide BLAST database.
d375502056f1 Uploaded
devteam
parents:
diff changeset
27 #