Mercurial > repos > devteam > ncbi_blast_plus

comparison test-data/tblastn_four_human_vs_rhodopsin.html @ 8:1f546099212f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author peterjc
date Tue, 19 Feb 2013 12:49:43 -0500
parents d375502056f1
children 4c4a0da938ff
comparison
equal deleted inserted replaced
7:4ce66a5401d0 8:1f546099212f
1 <HTML> 1 <HTML>
2 <TITLE>BLAST Search Results</TITLE> 2 <TITLE>BLAST Search Results</TITLE>
3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
4 <PRE> 4 <PRE>
5 5
6 <b>TBLASTN 2.2.25+</b> 6 <b>TBLASTN 2.2.26+</b>
7 7
8 8
9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 10 OS=Homo sapiens GN=ERP44 PE=1 SV=1
11 11
561 561
562 Length=4301 562 Length=4301
563 563
564 <script src="blastResult.js"></script> 564 <script src="blastResult.js"></script>
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust. 565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust.
566 Identities = 69/74 (94%), Positives = 73/74 (99%), Gaps = 0/74 (0%) 566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
567 Frame = +3 567 Frame = +3
568 568
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298 569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+ 570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326 571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235 582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE + 583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031 584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031
585 585
586 586
587 Score = 229 bits (523), Expect = 1e-64, Method: Compositional matrix adjust. 587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust.
588 Identities = 107/111 (97%), Positives = 109/111 (99%), Gaps = 0/111 (0%) 588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
589 Frame = +1 589 Frame = +1
590 590
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG 596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333 597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333
598 598
599 599
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust. 600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust.
601 Identities = 55/59 (94%), Positives = 56/59 (95%), Gaps = 0/59 (0%) 601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
602 Frame = +3 602 Frame = +3
603 603
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177 604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR 605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580 606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580
607 607
608 608
609 Score = 57.7 bits (125), Expect = 6e-13, Method: Compositional matrix adjust. 609 Score = 57.7 bits (125), Expect = 2e-12, Method: Compositional matrix adjust.
610 Identities = 23/26 (89%), Positives = 24/26 (93%), Gaps = 0/26 (0%) 610 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
611 Frame = +1 611 Frame = +1
612 612
613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337 613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337
614 QFRNCMLTT+CCGKNPLGDDEAS T 614 QFRNCMLTT+CCGKNPLGDDEAS T
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299 615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
635 635
636 Length=983 636 Length=983
637 637
638 <script src="blastResult.js"></script> 638 <script src="blastResult.js"></script>
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. 639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust.
640 Identities = 310/326 (96%), Positives = 322/326 (99%), Gaps = 0/326 (0%) 640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
641 Frame = +1 641 Frame = +1
642 642
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180
685 685
686 Length=1047 686 Length=1047
687 687
688 <script src="blastResult.js"></script> 688 <script src="blastResult.js"></script>
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust. 689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
690 Identities = 325/348 (94%), Positives = 337/348 (97%), Gaps = 0/348 (0%) 690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
691 Frame = +1 691 Frame = +1
692 692
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY 694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180 695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180
735 735
736 Length=1344 736 Length=1344
737 737
738 <script src="blastResult.js"></script> 738 <script src="blastResult.js"></script>
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. 739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust.
740 Identities = 281/342 (83%), Positives = 311/342 (91%), Gaps = 1/342 (0%) 740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
741 Frame = +2 741 Frame = +2
742 742
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY 744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY
745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202 745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202