Mercurial > repos > devteam > ncbi_blast_plus
comparison test-data/tblastn_four_human_vs_rhodopsin.html @ 8:1f546099212f draft
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author | peterjc |
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date | Tue, 19 Feb 2013 12:49:43 -0500 |
parents | d375502056f1 |
children | 4c4a0da938ff |
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7:4ce66a5401d0 | 8:1f546099212f |
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1 <HTML> | 1 <HTML> |
2 <TITLE>BLAST Search Results</TITLE> | 2 <TITLE>BLAST Search Results</TITLE> |
3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> | 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> |
4 <PRE> | 4 <PRE> |
5 | 5 |
6 <b>TBLASTN 2.2.25+</b> | 6 <b>TBLASTN 2.2.26+</b> |
7 | 7 |
8 | 8 |
9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | 9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 |
10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | 10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 |
11 | 11 |
561 | 561 |
562 Length=4301 | 562 Length=4301 |
563 | 563 |
564 <script src="blastResult.js"></script> | 564 <script src="blastResult.js"></script> |
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust. | 565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust. |
566 Identities = 69/74 (94%), Positives = 73/74 (99%), Gaps = 0/74 (0%) | 566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%) |
567 Frame = +3 | 567 Frame = +3 |
568 | 568 |
569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298 | 569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298 |
570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+ | 570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+ |
571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326 | 571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326 |
582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235 | 582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235 |
583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE + | 583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE + |
584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031 | 584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031 |
585 | 585 |
586 | 586 |
587 Score = 229 bits (523), Expect = 1e-64, Method: Compositional matrix adjust. | 587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust. |
588 Identities = 107/111 (97%), Positives = 109/111 (99%), Gaps = 0/111 (0%) | 588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%) |
589 Frame = +1 | 589 Frame = +1 |
590 | 590 |
591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 | 591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 |
592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT | 592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT |
593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 | 593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 |
596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG | 596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG |
597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333 | 597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333 |
598 | 598 |
599 | 599 |
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust. | 600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust. |
601 Identities = 55/59 (94%), Positives = 56/59 (95%), Gaps = 0/59 (0%) | 601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%) |
602 Frame = +3 | 602 Frame = +3 |
603 | 603 |
604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177 | 604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177 |
605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR | 605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR |
606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580 | 606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580 |
607 | 607 |
608 | 608 |
609 Score = 57.7 bits (125), Expect = 6e-13, Method: Compositional matrix adjust. | 609 Score = 57.7 bits (125), Expect = 2e-12, Method: Compositional matrix adjust. |
610 Identities = 23/26 (89%), Positives = 24/26 (93%), Gaps = 0/26 (0%) | 610 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%) |
611 Frame = +1 | 611 Frame = +1 |
612 | 612 |
613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337 | 613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337 |
614 QFRNCMLTT+CCGKNPLGDDEAS T | 614 QFRNCMLTT+CCGKNPLGDDEAS T |
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299 | 615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299 |
635 | 635 |
636 Length=983 | 636 Length=983 |
637 | 637 |
638 <script src="blastResult.js"></script> | 638 <script src="blastResult.js"></script> |
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. | 639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. |
640 Identities = 310/326 (96%), Positives = 322/326 (99%), Gaps = 0/326 (0%) | 640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%) |
641 Frame = +1 | 641 Frame = +1 |
642 | 642 |
643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 | 643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 |
644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT | 644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT |
645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 | 645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 |
685 | 685 |
686 Length=1047 | 686 Length=1047 |
687 | 687 |
688 <script src="blastResult.js"></script> | 688 <script src="blastResult.js"></script> |
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust. | 689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust. |
690 Identities = 325/348 (94%), Positives = 337/348 (97%), Gaps = 0/348 (0%) | 690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%) |
691 Frame = +1 | 691 Frame = +1 |
692 | 692 |
693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | 693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 |
694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY | 694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY |
695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180 | 695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180 |
735 | 735 |
736 Length=1344 | 736 Length=1344 |
737 | 737 |
738 <script src="blastResult.js"></script> | 738 <script src="blastResult.js"></script> |
739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. | 739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. |
740 Identities = 281/342 (83%), Positives = 311/342 (91%), Gaps = 1/342 (0%) | 740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%) |
741 Frame = +2 | 741 Frame = +2 |
742 | 742 |
743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | 743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 |
744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY | 744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY |
745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202 | 745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202 |