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comparison test-data/tblastn_four_human_vs_rhodopsin.xml @ 8:1f546099212f draft

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Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.
author peterjc
date Tue, 19 Feb 2013 12:49:43 -0500
parents d375502056f1
children 4c4a0da938ff
comparison
equal deleted inserted replaced
7:4ce66a5401d0 8:1f546099212f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd"> 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput> 3 <BlastOutput>
4 <BlastOutput_program>tblastn</BlastOutput_program> 4 <BlastOutput_program>tblastn</BlastOutput_program>
5 <BlastOutput_version>TBLASTN 2.2.25+</BlastOutput_version> 5 <BlastOutput_version>TBLASTN 2.2.26+</BlastOutput_version>
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db></BlastOutput_db> 7 <BlastOutput_db></BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> 9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
10 <BlastOutput_query-len>406</BlastOutput_query-len> 10 <BlastOutput_query-len>406</BlastOutput_query-len>
373 <Hit_accession>Subject_1</Hit_accession> 373 <Hit_accession>Subject_1</Hit_accession>
374 <Hit_len>1047</Hit_len> 374 <Hit_len>1047</Hit_len>
375 <Hit_hsps> 375 <Hit_hsps>
376 <Hsp> 376 <Hsp>
377 <Hsp_num>1</Hsp_num> 377 <Hsp_num>1</Hsp_num>
378 <Hsp_bit-score>732.392902459534</Hsp_bit-score> 378 <Hsp_bit-score>732.393</Hsp_bit-score>
379 <Hsp_score>1689</Hsp_score> 379 <Hsp_score>1689</Hsp_score>
380 <Hsp_evalue>0</Hsp_evalue> 380 <Hsp_evalue>0</Hsp_evalue>
381 <Hsp_query-from>1</Hsp_query-from> 381 <Hsp_query-from>1</Hsp_query-from>
382 <Hsp_query-to>348</Hsp_query-to> 382 <Hsp_query-to>348</Hsp_query-to>
383 <Hsp_hit-from>1</Hsp_hit-from> 383 <Hsp_hit-from>1</Hsp_hit-from>
420 <Hit_accession>Subject_2</Hit_accession> 420 <Hit_accession>Subject_2</Hit_accession>
421 <Hit_len>1574</Hit_len> 421 <Hit_len>1574</Hit_len>
422 <Hit_hsps> 422 <Hit_hsps>
423 <Hsp> 423 <Hsp>
424 <Hsp_num>1</Hsp_num> 424 <Hsp_num>1</Hsp_num>
425 <Hsp_bit-score>646.119739014374</Hsp_bit-score> 425 <Hsp_bit-score>646.12</Hsp_bit-score>
426 <Hsp_score>1489</Hsp_score> 426 <Hsp_score>1489</Hsp_score>
427 <Hsp_evalue>0</Hsp_evalue> 427 <Hsp_evalue>0</Hsp_evalue>
428 <Hsp_query-from>1</Hsp_query-from> 428 <Hsp_query-from>1</Hsp_query-from>
429 <Hsp_query-to>341</Hsp_query-to> 429 <Hsp_query-to>341</Hsp_query-to>
430 <Hsp_hit-from>42</Hsp_hit-from> 430 <Hsp_hit-from>42</Hsp_hit-from>
467 <Hit_accession>Subject_3</Hit_accession> 467 <Hit_accession>Subject_3</Hit_accession>
468 <Hit_len>4301</Hit_len> 468 <Hit_len>4301</Hit_len>
469 <Hit_hsps> 469 <Hit_hsps>
470 <Hsp> 470 <Hsp>
471 <Hsp_num>1</Hsp_num> 471 <Hsp_num>1</Hsp_num>
472 <Hsp_bit-score>151.343146656381</Hsp_bit-score> 472 <Hsp_bit-score>151.343</Hsp_bit-score>
473 <Hsp_score>342</Hsp_score> 473 <Hsp_score>342</Hsp_score>
474 <Hsp_evalue>1.39566684546685e-72</Hsp_evalue> 474 <Hsp_evalue>1.39567e-72</Hsp_evalue>
475 <Hsp_query-from>239</Hsp_query-from> 475 <Hsp_query-from>239</Hsp_query-from>
476 <Hsp_query-to>312</Hsp_query-to> 476 <Hsp_query-to>312</Hsp_query-to>
477 <Hsp_hit-from>3147</Hsp_hit-from> 477 <Hsp_hit-from>3147</Hsp_hit-from>
478 <Hsp_hit-to>3368</Hsp_hit-to> 478 <Hsp_hit-to>3368</Hsp_hit-to>
479 <Hsp_query-frame>0</Hsp_query-frame> 479 <Hsp_query-frame>0</Hsp_query-frame>
486 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> 486 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq>
487 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> 487 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
488 </Hsp> 488 </Hsp>
489 <Hsp> 489 <Hsp>
490 <Hsp_num>2</Hsp_num> 490 <Hsp_num>2</Hsp_num>
491 <Hsp_bit-score>126.323929257285</Hsp_bit-score> 491 <Hsp_bit-score>126.324</Hsp_bit-score>
492 <Hsp_score>284</Hsp_score> 492 <Hsp_score>284</Hsp_score>
493 <Hsp_evalue>1.39566684546685e-72</Hsp_evalue> 493 <Hsp_evalue>1.39567e-72</Hsp_evalue>
494 <Hsp_query-from>177</Hsp_query-from> 494 <Hsp_query-from>177</Hsp_query-from>
495 <Hsp_query-to>235</Hsp_query-to> 495 <Hsp_query-to>235</Hsp_query-to>
496 <Hsp_hit-from>2855</Hsp_hit-from> 496 <Hsp_hit-from>2855</Hsp_hit-from>
497 <Hsp_hit-to>3031</Hsp_hit-to> 497 <Hsp_hit-to>3031</Hsp_hit-to>
498 <Hsp_query-frame>0</Hsp_query-frame> 498 <Hsp_query-frame>0</Hsp_query-frame>
505 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> 505 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq>
506 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> 506 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline>
507 </Hsp> 507 </Hsp>
508 <Hsp> 508 <Hsp>
509 <Hsp_num>3</Hsp_num> 509 <Hsp_num>3</Hsp_num>
510 <Hsp_bit-score>229.420359574251</Hsp_bit-score> 510 <Hsp_bit-score>229.42</Hsp_bit-score>
511 <Hsp_score>523</Hsp_score> 511 <Hsp_score>523</Hsp_score>
512 <Hsp_evalue>9.84654801241353e-65</Hsp_evalue> 512 <Hsp_evalue>9.34154e-67</Hsp_evalue>
513 <Hsp_query-from>11</Hsp_query-from> 513 <Hsp_query-from>11</Hsp_query-from>
514 <Hsp_query-to>121</Hsp_query-to> 514 <Hsp_query-to>121</Hsp_query-to>
515 <Hsp_hit-from>1</Hsp_hit-from> 515 <Hsp_hit-from>1</Hsp_hit-from>
516 <Hsp_hit-to>333</Hsp_hit-to> 516 <Hsp_hit-to>333</Hsp_hit-to>
517 <Hsp_query-frame>0</Hsp_query-frame> 517 <Hsp_query-frame>0</Hsp_query-frame>
524 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> 524 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
525 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> 525 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
526 </Hsp> 526 </Hsp>
527 <Hsp> 527 <Hsp>
528 <Hsp_num>4</Hsp_num> 528 <Hsp_num>4</Hsp_num>
529 <Hsp_bit-score>122.873002719478</Hsp_bit-score> 529 <Hsp_bit-score>122.873</Hsp_bit-score>
530 <Hsp_score>276</Hsp_score> 530 <Hsp_score>276</Hsp_score>
531 <Hsp_evalue>1.40732096096596e-32</Hsp_evalue> 531 <Hsp_evalue>1.03783e-32</Hsp_evalue>
532 <Hsp_query-from>119</Hsp_query-from> 532 <Hsp_query-from>119</Hsp_query-from>
533 <Hsp_query-to>177</Hsp_query-to> 533 <Hsp_query-to>177</Hsp_query-to>
534 <Hsp_hit-from>1404</Hsp_hit-from> 534 <Hsp_hit-from>1404</Hsp_hit-from>
535 <Hsp_hit-to>1580</Hsp_hit-to> 535 <Hsp_hit-to>1580</Hsp_hit-to>
536 <Hsp_query-frame>0</Hsp_query-frame> 536 <Hsp_query-frame>0</Hsp_query-frame>
543 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> 543 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq>
544 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> 544 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
545 </Hsp> 545 </Hsp>
546 <Hsp> 546 <Hsp>
547 <Hsp_num>5</Hsp_num> 547 <Hsp_num>5</Hsp_num>
548 <Hsp_bit-score>57.7367643183824</Hsp_bit-score> 548 <Hsp_bit-score>57.7368</Hsp_bit-score>
549 <Hsp_score>125</Hsp_score> 549 <Hsp_score>125</Hsp_score>
550 <Hsp_evalue>5.60065526485586e-13</Hsp_evalue> 550 <Hsp_evalue>1.50808e-12</Hsp_evalue>
551 <Hsp_query-from>312</Hsp_query-from> 551 <Hsp_query-from>312</Hsp_query-from>
552 <Hsp_query-to>337</Hsp_query-to> 552 <Hsp_query-to>337</Hsp_query-to>
553 <Hsp_hit-from>4222</Hsp_hit-from> 553 <Hsp_hit-from>4222</Hsp_hit-from>
554 <Hsp_hit-to>4299</Hsp_hit-to> 554 <Hsp_hit-to>4299</Hsp_hit-to>
555 <Hsp_query-frame>0</Hsp_query-frame> 555 <Hsp_query-frame>0</Hsp_query-frame>
590 <Hit_accession>Subject_4</Hit_accession> 590 <Hit_accession>Subject_4</Hit_accession>
591 <Hit_len>983</Hit_len> 591 <Hit_len>983</Hit_len>
592 <Hit_hsps> 592 <Hit_hsps>
593 <Hsp> 593 <Hsp>
594 <Hsp_num>1</Hsp_num> 594 <Hsp_num>1</Hsp_num>
595 <Hsp_bit-score>658.197981896696</Hsp_bit-score> 595 <Hsp_bit-score>658.198</Hsp_bit-score>
596 <Hsp_score>1517</Hsp_score> 596 <Hsp_score>1517</Hsp_score>
597 <Hsp_evalue>0</Hsp_evalue> 597 <Hsp_evalue>0</Hsp_evalue>
598 <Hsp_query-from>11</Hsp_query-from> 598 <Hsp_query-from>11</Hsp_query-from>
599 <Hsp_query-to>336</Hsp_query-to> 599 <Hsp_query-to>336</Hsp_query-to>
600 <Hsp_hit-from>1</Hsp_hit-from> 600 <Hsp_hit-from>1</Hsp_hit-from>
637 <Hit_accession>Subject_5</Hit_accession> 637 <Hit_accession>Subject_5</Hit_accession>
638 <Hit_len>1047</Hit_len> 638 <Hit_len>1047</Hit_len>
639 <Hit_hsps> 639 <Hit_hsps>
640 <Hsp> 640 <Hsp>
641 <Hsp_num>1</Hsp_num> 641 <Hsp_num>1</Hsp_num>
642 <Hsp_bit-score>711.255977415469</Hsp_bit-score> 642 <Hsp_bit-score>711.256</Hsp_bit-score>
643 <Hsp_score>1640</Hsp_score> 643 <Hsp_score>1640</Hsp_score>
644 <Hsp_evalue>0</Hsp_evalue> 644 <Hsp_evalue>0</Hsp_evalue>
645 <Hsp_query-from>1</Hsp_query-from> 645 <Hsp_query-from>1</Hsp_query-from>
646 <Hsp_query-to>348</Hsp_query-to> 646 <Hsp_query-to>348</Hsp_query-to>
647 <Hsp_hit-from>1</Hsp_hit-from> 647 <Hsp_hit-from>1</Hsp_hit-from>
684 <Hit_accession>Subject_6</Hit_accession> 684 <Hit_accession>Subject_6</Hit_accession>
685 <Hit_len>1344</Hit_len> 685 <Hit_len>1344</Hit_len>
686 <Hit_hsps> 686 <Hit_hsps>
687 <Hsp> 687 <Hsp>
688 <Hsp_num>1</Hsp_num> 688 <Hsp_num>1</Hsp_num>
689 <Hsp_bit-score>626.708277239213</Hsp_bit-score> 689 <Hsp_bit-score>626.708</Hsp_bit-score>
690 <Hsp_score>1444</Hsp_score> 690 <Hsp_score>1444</Hsp_score>
691 <Hsp_evalue>0</Hsp_evalue> 691 <Hsp_evalue>0</Hsp_evalue>
692 <Hsp_query-from>1</Hsp_query-from> 692 <Hsp_query-from>1</Hsp_query-from>
693 <Hsp_query-to>341</Hsp_query-to> 693 <Hsp_query-to>341</Hsp_query-to>
694 <Hsp_hit-from>23</Hsp_hit-from> 694 <Hsp_hit-from>23</Hsp_hit-from>