Mercurial > repos > devteam > ncbi_blast_plus
comparison tools/ncbi_blast_plus/check_no_duplicates.py @ 26:2889433c7ae1 draft
v0.3.3 - fixed legacy dependecy definition
| author | peterjc |
|---|---|
| date | Sat, 20 Jul 2019 18:36:36 -0400 |
| parents | 31e517610e1f |
| children |
comparison
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| 25:e25d3acf6e68 | 26:2889433c7ae1 |
|---|---|
| 29 with open(filename, "rb") as binary_handle: | 29 with open(filename, "rb") as binary_handle: |
| 30 magic = binary_handle.read(2) | 30 magic = binary_handle.read(2) |
| 31 if not magic: | 31 if not magic: |
| 32 # Empty file, special case | 32 # Empty file, special case |
| 33 continue | 33 continue |
| 34 elif magic == b'\x1f\x8b': | 34 elif magic == b"\x1f\x8b": |
| 35 # Gzipped | 35 # Gzipped |
| 36 handle = gzip.open(filename, "rt") | 36 handle = gzip.open(filename, "rt") |
| 37 elif magic[0:1] == b">": | 37 elif magic[0:1] == b">": |
| 38 # Not gzipped, shoudl be plain FASTA | 38 # Not gzipped, shoudl be plain FASTA |
| 39 handle = open(filename, "r") | 39 handle = open(filename, "r") |