Mercurial > repos > devteam > ncbi_blast_plus
comparison tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml @ 20:3034ce97dd33 draft
Uploaded v0.1.08, can search multiple local databases, fixes a pipe problem in blastdbcmd, and minor internal changes.
author | peterjc |
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date | Mon, 07 Nov 2016 11:31:37 -0500 |
parents | 7f3c448e119b |
children | 6f386c5dc4fb |
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19:7f3c448e119b | 20:3034ce97dd33 |
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118 <param name="out_format" value="0" /> | 118 <param name="out_format" value="0" /> |
119 <param name="adv_opts_selector" value="advanced" /> | 119 <param name="adv_opts_selector" value="advanced" /> |
120 <param name="max_hits" value="1" /> | 120 <param name="max_hits" value="1" /> |
121 <output name="output1" file="blastn_chimera_vs_three_human_max1.txt" ftype="txt" /> | 121 <output name="output1" file="blastn_chimera_vs_three_human_max1.txt" ftype="txt" /> |
122 </test> | 122 </test> |
123 <test> | |
124 <param name="query" value="chimera.fasta" ftype="fasta" /> | |
125 <param name="db_opts_selector" value="db" /> | |
126 <param name="database" value="three_human_mRNA" /> | |
127 <param name="out_format" value="6" /> | |
128 <output name="output1" file="blastn_chimera_vs_three_human_db.tabular" ftype="tabular" /> | |
129 </test> | |
130 <test> | |
131 <param name="query" value="chimera.fasta" ftype="fasta" /> | |
132 <param name="db_opts_selector" value="db" /> | |
133 <param name="database" value="rhodopsin_nucs" /> | |
134 <param name="out_format" value="6" /> | |
135 <output name="output1" file="blastn_chimera_vs_rhodopsin_db.tabular" ftype="tabular" /> | |
136 </test> | |
137 <!-- next test is passing in two blast databases --> | |
138 <test> | |
139 <param name="query" value="chimera.fasta" ftype="fasta" /> | |
140 <param name="db_opts_selector" value="db" /> | |
141 <param name="database" value="three_human_mRNA,rhodopsin_nucs" /> | |
142 <param name="out_format" value="6" /> | |
143 <output name="output1" file="blastn_chimera_vs_three_human_and_rhodopsin_db.tabular" ftype="tabular" /> | |
144 </test> | |
123 </tests> | 145 </tests> |
124 <help> | 146 <help> |
125 | 147 |
126 @SEARCH_TIME_WARNING@ | 148 @SEARCH_TIME_WARNING@ |
127 | 149 |