comparison tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml @ 20:3034ce97dd33 draft

Uploaded v0.1.08, can search multiple local databases, fixes a pipe problem in blastdbcmd, and minor internal changes.

19:7f3c448e119b

            <param name="out_format" value="0" />
            <param name="adv_opts_selector" value="advanced" />
            <param name="max_hits" value="1" />
            <output name="output1" file="blastn_chimera_vs_three_human_max1.txt" ftype="txt" />
        </test>
    </tests>
    <help>
    
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20:3034ce97dd33

            <param name="out_format" value="0" />
            <param name="adv_opts_selector" value="advanced" />
            <param name="max_hits" value="1" />
            <output name="output1" file="blastn_chimera_vs_three_human_max1.txt" ftype="txt" />
        </test>
        <test>
            <param name="query" value="chimera.fasta" ftype="fasta" />
            <param name="db_opts_selector" value="db" />
            <param name="database" value="three_human_mRNA" />
            <param name="out_format" value="6" />
            <output name="output1" file="blastn_chimera_vs_three_human_db.tabular" ftype="tabular" />
        </test>
        <test>
            <param name="query" value="chimera.fasta" ftype="fasta" />
            <param name="db_opts_selector" value="db" />
            <param name="database" value="rhodopsin_nucs" />
            <param name="out_format" value="6" />
            <output name="output1" file="blastn_chimera_vs_rhodopsin_db.tabular" ftype="tabular" />
        </test>
        <!-- next test is passing in two blast databases -->
        <test>
            <param name="query" value="chimera.fasta" ftype="fasta" />
            <param name="db_opts_selector" value="db" />
            <param name="database" value="three_human_mRNA,rhodopsin_nucs" />
            <param name="out_format" value="6" />
            <output name="output1" file="blastn_chimera_vs_three_human_and_rhodopsin_db.tabular" ftype="tabular" />
        </test>
    </tests>
    <help>
    
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