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comparison test-data/tblastn_four_human_vs_rhodopsin.html @ 11:4c4a0da938ff draft

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Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. Supports $GALAXY_SLOTS. Includes more tests and heavy use of macros.
author peterjc
date Thu, 05 Dec 2013 06:55:59 -0500
parents 1f546099212f
children 623f727cdff1
comparison
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10:70e7dcbf6573 11:4c4a0da938ff
1 <HTML> 1 <HTML>
2 <TITLE>BLAST Search Results</TITLE> 2 <TITLE>BLAST Search Results</TITLE>
3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
4 <PRE> 4 <PRE>
5 5
6 <b>TBLASTN 2.2.26+</b> 6 <b>TBLASTN 2.2.28+</b>
7 7
8 8
9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 10 OS=Homo sapiens GN=ERP44 PE=1 SV=1
11 11
18 18
19 ***** No hits found ***** 19 ***** No hits found *****
20 20
21 21
22 22
23 Lambda K H 23 Lambda K H a alpha
24 0.347 0.182 0.684 24 0.347 0.182 0.684 0.522 1.92
25 25
26 Gapped 26 Gapped
27 Lambda K H 27 Lambda K H a alpha sigma
28 0.299 0.0710 0.270 28 0.299 0.0710 0.270 1.10 13.8 14.5
29 29
30 Effective search space used: 127710 30 Effective search space used: 127710
31 31
32 32
33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
43 43
44 ***** No hits found ***** 44 ***** No hits found *****
45 45
46 46
47 47
48 Lambda K H 48 Lambda K H a alpha
49 0.347 0.182 0.684 49 0.347 0.182 0.684 0.522 1.92
50 50
51 Gapped 51 Gapped
52 Lambda K H 52 Lambda K H a alpha sigma
53 0.299 0.0710 0.270 53 0.299 0.0710 0.270 1.10 13.8 14.5
54 54
55 Effective search space used: 127710 55 Effective search space used: 127710
56 56
57 57
58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
68 68
69 ***** No hits found ***** 69 ***** No hits found *****
70 70
71 71
72 72
73 Lambda K H 73 Lambda K H a alpha
74 0.347 0.182 0.684 74 0.347 0.182 0.684 0.522 1.92
75 75
76 Gapped 76 Gapped
77 Lambda K H 77 Lambda K H a alpha sigma
78 0.299 0.0710 0.270 78 0.299 0.0710 0.270 1.10 13.8 14.5
79 79
80 Effective search space used: 127710 80 Effective search space used: 127710
81 81
82 82
83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
93 93
94 ***** No hits found ***** 94 ***** No hits found *****
95 95
96 96
97 97
98 Lambda K H 98 Lambda K H a alpha
99 0.347 0.182 0.684 99 0.347 0.182 0.684 0.522 1.92
100 100
101 Gapped 101 Gapped
102 Lambda K H 102 Lambda K H a alpha sigma
103 0.299 0.0710 0.270 103 0.299 0.0710 0.270 1.10 13.8 14.5
104 104
105 Effective search space used: 127710 105 Effective search space used: 127710
106 106
107 107
108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
118 118
119 ***** No hits found ***** 119 ***** No hits found *****
120 120
121 121
122 122
123 Lambda K H 123 Lambda K H a alpha
124 0.347 0.182 0.684 124 0.347 0.182 0.684 0.522 1.92
125 125
126 Gapped 126 Gapped
127 Lambda K H 127 Lambda K H a alpha sigma
128 0.299 0.0710 0.270 128 0.299 0.0710 0.270 1.10 13.8 14.5
129 129
130 Effective search space used: 127710 130 Effective search space used: 127710
131 131
132 132
133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
143 143
144 ***** No hits found ***** 144 ***** No hits found *****
145 145
146 146
147 147
148 Lambda K H 148 Lambda K H a alpha
149 0.347 0.182 0.684 149 0.347 0.182 0.684 0.522 1.92
150 150
151 Gapped 151 Gapped
152 Lambda K H 152 Lambda K H a alpha sigma
153 0.299 0.0710 0.270 153 0.299 0.0710 0.270 1.10 13.8 14.5
154 154
155 Effective search space used: 127710 155 Effective search space used: 127710
156 156
157 157
158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens 158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
167 167
168 ***** No hits found ***** 168 ***** No hits found *****
169 169
170 170
171 171
172 Lambda K H 172 Lambda K H a alpha
173 0.334 0.170 0.615 173 0.334 0.170 0.615 0.522 1.92
174 174
175 Gapped 175 Gapped
176 Lambda K H 176 Lambda K H a alpha sigma
177 0.299 0.0710 0.270 177 0.299 0.0710 0.270 1.10 13.8 14.5
178 178
179 Effective search space used: 370988 179 Effective search space used: 370988
180 180
181 181
182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens 182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
192 192
193 ***** No hits found ***** 193 ***** No hits found *****
194 194
195 195
196 196
197 Lambda K H 197 Lambda K H a alpha
198 0.334 0.170 0.615 198 0.334 0.170 0.615 0.522 1.92
199 199
200 Gapped 200 Gapped
201 Lambda K H 201 Lambda K H a alpha sigma
202 0.299 0.0710 0.270 202 0.299 0.0710 0.270 1.10 13.8 14.5
203 203
204 Effective search space used: 370988 204 Effective search space used: 370988
205 205
206 206
207 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens 207 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
217 217
218 ***** No hits found ***** 218 ***** No hits found *****
219 219
220 220
221 221
222 Lambda K H 222 Lambda K H a alpha
223 0.334 0.170 0.615 223 0.334 0.170 0.615 0.522 1.92
224 224
225 Gapped 225 Gapped
226 Lambda K H 226 Lambda K H a alpha sigma
227 0.299 0.0710 0.270 227 0.299 0.0710 0.270 1.10 13.8 14.5
228 228
229 Effective search space used: 370988 229 Effective search space used: 370988
230 230
231 231
232 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens 232 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
242 242
243 ***** No hits found ***** 243 ***** No hits found *****
244 244
245 245
246 246
247 Lambda K H 247 Lambda K H a alpha
248 0.334 0.170 0.615 248 0.334 0.170 0.615 0.522 1.92
249 249
250 Gapped 250 Gapped
251 Lambda K H 251 Lambda K H a alpha sigma
252 0.299 0.0710 0.270 252 0.299 0.0710 0.270 1.10 13.8 14.5
253 253
254 Effective search space used: 370988 254 Effective search space used: 370988
255 255
256 256
257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens 257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
267 267
268 ***** No hits found ***** 268 ***** No hits found *****
269 269
270 270
271 271
272 Lambda K H 272 Lambda K H a alpha
273 0.334 0.170 0.615 273 0.334 0.170 0.615 0.522 1.92
274 274
275 Gapped 275 Gapped
276 Lambda K H 276 Lambda K H a alpha sigma
277 0.299 0.0710 0.270 277 0.299 0.0710 0.270 1.10 13.8 14.5
278 278
279 Effective search space used: 370988 279 Effective search space used: 370988
280 280
281 281
282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens 282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
292 292
293 ***** No hits found ***** 293 ***** No hits found *****
294 294
295 295
296 296
297 Lambda K H 297 Lambda K H a alpha
298 0.334 0.170 0.615 298 0.334 0.170 0.615 0.522 1.92
299 299
300 Gapped 300 Gapped
301 Lambda K H 301 Lambda K H a alpha sigma
302 0.299 0.0710 0.270 302 0.299 0.0710 0.270 1.10 13.8 14.5
303 303
304 Effective search space used: 370988 304 Effective search space used: 370988
305 305
306 306
307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
316 316
317 ***** No hits found ***** 317 ***** No hits found *****
318 318
319 319
320 320
321 Lambda K H 321 Lambda K H a alpha
322 0.346 0.180 0.700 322 0.346 0.180 0.700 0.522 1.92
323 323
324 Gapped 324 Gapped
325 Lambda K H 325 Lambda K H a alpha sigma
326 0.299 0.0710 0.270 326 0.299 0.0710 0.270 1.10 13.8 14.5
327 327
328 Effective search space used: 441350 328 Effective search space used: 441350
329 329
330 330
331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
341 341
342 ***** No hits found ***** 342 ***** No hits found *****
343 343
344 344
345 345
346 Lambda K H 346 Lambda K H a alpha
347 0.346 0.180 0.700 347 0.346 0.180 0.700 0.522 1.92
348 348
349 Gapped 349 Gapped
350 Lambda K H 350 Lambda K H a alpha sigma
351 0.299 0.0710 0.270 351 0.299 0.0710 0.270 1.10 13.8 14.5
352 352
353 Effective search space used: 441350 353 Effective search space used: 441350
354 354
355 355
356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
366 366
367 ***** No hits found ***** 367 ***** No hits found *****
368 368
369 369
370 370
371 Lambda K H 371 Lambda K H a alpha
372 0.346 0.180 0.700 372 0.346 0.180 0.700 0.522 1.92
373 373
374 Gapped 374 Gapped
375 Lambda K H 375 Lambda K H a alpha sigma
376 0.299 0.0710 0.270 376 0.299 0.0710 0.270 1.10 13.8 14.5
377 377
378 Effective search space used: 441350 378 Effective search space used: 441350
379 379
380 380
381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
391 391
392 ***** No hits found ***** 392 ***** No hits found *****
393 393
394 394
395 395
396 Lambda K H 396 Lambda K H a alpha
397 0.346 0.180 0.700 397 0.346 0.180 0.700 0.522 1.92
398 398
399 Gapped 399 Gapped
400 Lambda K H 400 Lambda K H a alpha sigma
401 0.299 0.0710 0.270 401 0.299 0.0710 0.270 1.10 13.8 14.5
402 402
403 Effective search space used: 441350 403 Effective search space used: 441350
404 404
405 405
406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
416 416
417 ***** No hits found ***** 417 ***** No hits found *****
418 418
419 419
420 420
421 Lambda K H 421 Lambda K H a alpha
422 0.346 0.180 0.700 422 0.346 0.180 0.700 0.522 1.92
423 423
424 Gapped 424 Gapped
425 Lambda K H 425 Lambda K H a alpha sigma
426 0.299 0.0710 0.270 426 0.299 0.0710 0.270 1.10 13.8 14.5
427 427
428 Effective search space used: 441350 428 Effective search space used: 441350
429 429
430 430
431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
441 441
442 ***** No hits found ***** 442 ***** No hits found *****
443 443
444 444
445 445
446 Lambda K H 446 Lambda K H a alpha
447 0.346 0.180 0.700 447 0.346 0.180 0.700 0.522 1.92
448 448
449 Gapped 449 Gapped
450 Lambda K H 450 Lambda K H a alpha sigma
451 0.299 0.0710 0.270 451 0.299 0.0710 0.270 1.10 13.8 14.5
452 452
453 Effective search space used: 441350 453 Effective search space used: 441350
454 454
455 455
456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA 490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA
491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044 491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044
492 492
493 493
494 494
495 Lambda K H 495 Lambda K H a alpha
496 0.351 0.182 0.707 496 0.351 0.182 0.707 0.522 1.92
497 497
498 Gapped 498 Gapped
499 Lambda K H 499 Lambda K H a alpha sigma
500 0.299 0.0710 0.270 500 0.299 0.0710 0.270 1.10 13.8 14.5
501 501
502 Effective search space used: 109230 502 Effective search space used: 109230
503 503
504 504
505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE 540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE
541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067 541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067
542 542
543 543
544 544
545 Lambda K H 545 Lambda K H a alpha
546 0.351 0.182 0.707 546 0.351 0.182 0.707 0.522 1.92
547 547
548 Gapped 548 Gapped
549 Lambda K H 549 Lambda K H a alpha sigma
550 0.299 0.0710 0.270 550 0.299 0.0710 0.270 1.10 13.8 14.5
551 551
552 Effective search space used: 109230 552 Effective search space used: 109230
553 553
554 554
555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
614 QFRNCMLTT+CCGKNPLGDDEAS T 614 QFRNCMLTT+CCGKNPLGDDEAS T
615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299 615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299
616 616
617 617
618 618
619 Lambda K H 619 Lambda K H a alpha
620 0.351 0.182 0.707 620 0.351 0.182 0.707 0.522 1.92
621 621
622 Gapped 622 Gapped
623 Lambda K H 623 Lambda K H a alpha sigma
624 0.299 0.0710 0.270 624 0.299 0.0710 0.270 1.10 13.8 14.5
625 625
626 Effective search space used: 109230 626 Effective search space used: 109230
627 627
628 628
629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
664 KQFRNCMLTT+CCGKNPLGDDEAS T 664 KQFRNCMLTT+CCGKNPLGDDEAS T
665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978 665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978
666 666
667 667
668 668
669 Lambda K H 669 Lambda K H a alpha
670 0.351 0.182 0.707 670 0.351 0.182 0.707 0.522 1.92
671 671
672 Gapped 672 Gapped
673 Lambda K H 673 Lambda K H a alpha sigma
674 0.299 0.0710 0.270 674 0.299 0.0710 0.270 1.10 13.8 14.5
675 675
676 Effective search space used: 109230 676 Effective search space used: 109230
677 677
678 678
679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA 714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044 715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044
716 716
717 717
718 718
719 Lambda K H 719 Lambda K H a alpha
720 0.351 0.182 0.707 720 0.351 0.182 0.707 0.522 1.92
721 721
722 Gapped 722 Gapped
723 Lambda K H 723 Lambda K H a alpha sigma
724 0.299 0.0710 0.270 724 0.299 0.0710 0.270 1.10 13.8 14.5
725 725
726 Effective search space used: 109230 726 Effective search space used: 109230
727 727
728 728
729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE 764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE
765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048 765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048
766 766
767 767
768 768
769 Lambda K H 769 Lambda K H a alpha
770 0.351 0.182 0.707 770 0.351 0.182 0.707 0.522 1.92
771 771
772 Gapped 772 Gapped
773 Lambda K H 773 Lambda K H a alpha sigma
774 0.299 0.0710 0.270 774 0.299 0.0710 0.270 1.10 13.8 14.5
775 775
776 Effective search space used: 109230 776 Effective search space used: 109230
777 777
778 778
779 779