Mercurial > repos > devteam > ncbi_blast_plus
comparison test-data/blastx_rhodopsin_vs_four_human.xml @ 13:623f727cdff1 draft
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields.
author | peterjc |
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date | Fri, 14 Mar 2014 07:40:46 -0400 |
parents | 4c4a0da938ff |
children | c16c30e9ad5b |
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12:6560192c5098 | 13:623f727cdff1 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> | 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
3 <BlastOutput> | 3 <BlastOutput> |
4 <BlastOutput_program>blastx</BlastOutput_program> | 4 <BlastOutput_program>blastx</BlastOutput_program> |
5 <BlastOutput_version>BLASTX 2.2.28+</BlastOutput_version> | 5 <BlastOutput_version>BLASTX 2.2.29+</BlastOutput_version> |
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
7 <BlastOutput_db></BlastOutput_db> | 7 <BlastOutput_db></BlastOutput_db> |
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> |
9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> | 9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> |
10 <BlastOutput_query-len>1047</BlastOutput_query-len> | 10 <BlastOutput_query-len>1047</BlastOutput_query-len> |
305 <Hit_accession>Subject_4</Hit_accession> | 305 <Hit_accession>Subject_4</Hit_accession> |
306 <Hit_len>348</Hit_len> | 306 <Hit_len>348</Hit_len> |
307 <Hit_hsps> | 307 <Hit_hsps> |
308 <Hsp> | 308 <Hsp> |
309 <Hsp_num>1</Hsp_num> | 309 <Hsp_num>1</Hsp_num> |
310 <Hsp_bit-score>220.32</Hsp_bit-score> | 310 <Hsp_bit-score>220.705</Hsp_bit-score> |
311 <Hsp_score>560</Hsp_score> | 311 <Hsp_score>561</Hsp_score> |
312 <Hsp_evalue>4.29169e-67</Hsp_evalue> | 312 <Hsp_evalue>3.21377e-67</Hsp_evalue> |
313 <Hsp_query-from>1</Hsp_query-from> | 313 <Hsp_query-from>1</Hsp_query-from> |
314 <Hsp_query-to>333</Hsp_query-to> | 314 <Hsp_query-to>333</Hsp_query-to> |
315 <Hsp_hit-from>11</Hsp_hit-from> | 315 <Hsp_hit-from>11</Hsp_hit-from> |
316 <Hsp_hit-to>121</Hsp_hit-to> | 316 <Hsp_hit-to>121</Hsp_hit-to> |
317 <Hsp_query-frame>1</Hsp_query-frame> | 317 <Hsp_query-frame>1</Hsp_query-frame> |
343 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> | 343 <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> |
344 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> | 344 <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> |
345 </Hsp> | 345 </Hsp> |
346 <Hsp> | 346 <Hsp> |
347 <Hsp_num>3</Hsp_num> | 347 <Hsp_num>3</Hsp_num> |
348 <Hsp_bit-score>121.324</Hsp_bit-score> | 348 <Hsp_bit-score>121.709</Hsp_bit-score> |
349 <Hsp_score>303</Hsp_score> | 349 <Hsp_score>304</Hsp_score> |
350 <Hsp_evalue>1.96633e-33</Hsp_evalue> | 350 <Hsp_evalue>1.62516e-33</Hsp_evalue> |
351 <Hsp_query-from>2855</Hsp_query-from> | 351 <Hsp_query-from>2855</Hsp_query-from> |
352 <Hsp_query-to>3031</Hsp_query-to> | 352 <Hsp_query-to>3031</Hsp_query-to> |
353 <Hsp_hit-from>177</Hsp_hit-from> | 353 <Hsp_hit-from>177</Hsp_hit-from> |
354 <Hsp_hit-to>235</Hsp_hit-to> | 354 <Hsp_hit-to>235</Hsp_hit-to> |
355 <Hsp_query-frame>2</Hsp_query-frame> | 355 <Hsp_query-frame>2</Hsp_query-frame> |