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comparison test-data/blastn_rhodopsin_vs_three_human.xml @ 21:7538e2bfcd41 draft

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v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
author peterjc
date Wed, 19 Apr 2017 05:27:19 -0400
parents 577d9c12411a
children 31e517610e1f
comparison
equal deleted inserted replaced
20:3034ce97dd33 21:7538e2bfcd41
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput> 3 <BlastOutput>
4 <BlastOutput_program>blastn</BlastOutput_program> 4 <BlastOutput_program>blastn</BlastOutput_program>
5 <BlastOutput_version>BLASTN 2.2.31+</BlastOutput_version> 5 <BlastOutput_version>BLASTN 2.5.0+</BlastOutput_version>
6 <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), &quot;A greedy algorithm for aligning DNA sequences&quot;, J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference> 6 <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), &quot;A greedy algorithm for aligning DNA sequences&quot;, J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference>
7 <BlastOutput_db></BlastOutput_db> 7 <BlastOutput_db></BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def> 9 <BlastOutput_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</BlastOutput_query-def>
10 <BlastOutput_query-len>1047</BlastOutput_query-len> 10 <BlastOutput_query-len>1047</BlastOutput_query-len>
23 <Iteration_iter-num>1</Iteration_iter-num> 23 <Iteration_iter-num>1</Iteration_iter-num>
24 <Iteration_query-ID>Query_1</Iteration_query-ID> 24 <Iteration_query-ID>Query_1</Iteration_query-ID>
25 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> 25 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
26 <Iteration_query-len>1047</Iteration_query-len> 26 <Iteration_query-len>1047</Iteration_query-len>
27 <Iteration_hits> 27 <Iteration_hits>
28 </Iteration_hits>
29 <Iteration_stat>
30 <Statistics>
31 <Statistics_db-num>0</Statistics_db-num>
32 <Statistics_db-len>0</Statistics_db-len>
33 <Statistics_hsp-len>15</Statistics_hsp-len>
34 <Statistics_eff-space>4933992</Statistics_eff-space>
35 <Statistics_kappa>0.46</Statistics_kappa>
36 <Statistics_lambda>1.28</Statistics_lambda>
37 <Statistics_entropy>0.85</Statistics_entropy>
38 </Statistics>
39 </Iteration_stat>
40 <Iteration_message>No hits found</Iteration_message>
41 </Iteration>
42 <Iteration>
43 <Iteration_iter-num>2</Iteration_iter-num>
44 <Iteration_query-ID>Query_1</Iteration_query-ID>
45 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
46 <Iteration_query-len>1047</Iteration_query-len>
47 <Iteration_hits>
48 </Iteration_hits>
49 <Iteration_stat>
50 <Statistics>
51 <Statistics_db-num>0</Statistics_db-num>
52 <Statistics_db-len>0</Statistics_db-len>
53 <Statistics_hsp-len>15</Statistics_hsp-len>
54 <Statistics_eff-space>4933992</Statistics_eff-space>
55 <Statistics_kappa>0.46</Statistics_kappa>
56 <Statistics_lambda>1.28</Statistics_lambda>
57 <Statistics_entropy>0.85</Statistics_entropy>
58 </Statistics>
59 </Iteration_stat>
60 <Iteration_message>No hits found</Iteration_message>
61 </Iteration>
62 <Iteration>
63 <Iteration_iter-num>3</Iteration_iter-num>
64 <Iteration_query-ID>Query_1</Iteration_query-ID>
65 <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
66 <Iteration_query-len>1047</Iteration_query-len>
67 <Iteration_hits>
68 <Hit> 28 <Hit>
69 <Hit_num>1</Hit_num> 29 <Hit_num>1</Hit_num>
70 <Hit_id>Subject_3</Hit_id> 30 <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
71 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> 31 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
72 <Hit_accession>Subject_3</Hit_accession> 32 <Hit_accession>Subject_3</Hit_accession>
73 <Hit_len>1213</Hit_len> 33 <Hit_len>1213</Hit_len>
74 <Hit_hsps> 34 <Hit_hsps>
75 <Hsp> 35 <Hsp>
96 </Iteration_hits> 56 </Iteration_hits>
97 <Iteration_stat> 57 <Iteration_stat>
98 <Statistics> 58 <Statistics>
99 <Statistics_db-num>0</Statistics_db-num> 59 <Statistics_db-num>0</Statistics_db-num>
100 <Statistics_db-len>0</Statistics_db-len> 60 <Statistics_db-len>0</Statistics_db-len>
101 <Statistics_hsp-len>15</Statistics_hsp-len> 61 <Statistics_hsp-len>16</Statistics_hsp-len>
102 <Statistics_eff-space>4933992</Statistics_eff-space> 62 <Statistics_eff-space>11015204</Statistics_eff-space>
103 <Statistics_kappa>0.46</Statistics_kappa> 63 <Statistics_kappa>0.46</Statistics_kappa>
104 <Statistics_lambda>1.28</Statistics_lambda> 64 <Statistics_lambda>1.28</Statistics_lambda>
105 <Statistics_entropy>0.85</Statistics_entropy> 65 <Statistics_entropy>0.85</Statistics_entropy>
106 </Statistics> 66 </Statistics>
107 </Iteration_stat> 67 </Iteration_stat>
108 </Iteration> 68 </Iteration>
109 <Iteration> 69 <Iteration>
110 <Iteration_iter-num>4</Iteration_iter-num> 70 <Iteration_iter-num>2</Iteration_iter-num>
111 <Iteration_query-ID>Query_2</Iteration_query-ID> 71 <Iteration_query-ID>Query_2</Iteration_query-ID>
112 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> 72 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
113 <Iteration_query-len>1574</Iteration_query-len> 73 <Iteration_query-len>1574</Iteration_query-len>
114 <Iteration_hits> 74 <Iteration_hits>
115 </Iteration_hits> 75 </Iteration_hits>
116 <Iteration_stat> 76 <Iteration_stat>
117 <Statistics> 77 <Statistics>
118 <Statistics_db-num>0</Statistics_db-num> 78 <Statistics_db-num>0</Statistics_db-num>
119 <Statistics_db-len>0</Statistics_db-len> 79 <Statistics_db-len>0</Statistics_db-len>
120 <Statistics_hsp-len>15</Statistics_hsp-len> 80 <Statistics_hsp-len>16</Statistics_hsp-len>
121 <Statistics_eff-space>7453579</Statistics_eff-space> 81 <Statistics_eff-space>16645672</Statistics_eff-space>
122 <Statistics_kappa>0.46</Statistics_kappa> 82 <Statistics_kappa>0.46</Statistics_kappa>
123 <Statistics_lambda>1.28</Statistics_lambda> 83 <Statistics_lambda>1.28</Statistics_lambda>
124 <Statistics_entropy>0.85</Statistics_entropy> 84 <Statistics_entropy>0.85</Statistics_entropy>
125 </Statistics> 85 </Statistics>
126 </Iteration_stat> 86 </Iteration_stat>
127 <Iteration_message>No hits found</Iteration_message> 87 <Iteration_message>No hits found</Iteration_message>
128 </Iteration> 88 </Iteration>
129 <Iteration> 89 <Iteration>
130 <Iteration_iter-num>5</Iteration_iter-num> 90 <Iteration_iter-num>3</Iteration_iter-num>
131 <Iteration_query-ID>Query_2</Iteration_query-ID>
132 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
133 <Iteration_query-len>1574</Iteration_query-len>
134 <Iteration_hits>
135 </Iteration_hits>
136 <Iteration_stat>
137 <Statistics>
138 <Statistics_db-num>0</Statistics_db-num>
139 <Statistics_db-len>0</Statistics_db-len>
140 <Statistics_hsp-len>15</Statistics_hsp-len>
141 <Statistics_eff-space>7453579</Statistics_eff-space>
142 <Statistics_kappa>0.46</Statistics_kappa>
143 <Statistics_lambda>1.28</Statistics_lambda>
144 <Statistics_entropy>0.85</Statistics_entropy>
145 </Statistics>
146 </Iteration_stat>
147 <Iteration_message>No hits found</Iteration_message>
148 </Iteration>
149 <Iteration>
150 <Iteration_iter-num>6</Iteration_iter-num>
151 <Iteration_query-ID>Query_2</Iteration_query-ID>
152 <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
153 <Iteration_query-len>1574</Iteration_query-len>
154 <Iteration_hits>
155 </Iteration_hits>
156 <Iteration_stat>
157 <Statistics>
158 <Statistics_db-num>0</Statistics_db-num>
159 <Statistics_db-len>0</Statistics_db-len>
160 <Statistics_hsp-len>15</Statistics_hsp-len>
161 <Statistics_eff-space>7453579</Statistics_eff-space>
162 <Statistics_kappa>0.46</Statistics_kappa>
163 <Statistics_lambda>1.28</Statistics_lambda>
164 <Statistics_entropy>0.85</Statistics_entropy>
165 </Statistics>
166 </Iteration_stat>
167 <Iteration_message>No hits found</Iteration_message>
168 </Iteration>
169 <Iteration>
170 <Iteration_iter-num>7</Iteration_iter-num>
171 <Iteration_query-ID>Query_3</Iteration_query-ID> 91 <Iteration_query-ID>Query_3</Iteration_query-ID>
172 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> 92 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
173 <Iteration_query-len>4301</Iteration_query-len> 93 <Iteration_query-len>4301</Iteration_query-len>
174 <Iteration_hits> 94 <Iteration_hits>
175 </Iteration_hits>
176 <Iteration_stat>
177 <Statistics>
178 <Statistics_db-num>0</Statistics_db-num>
179 <Statistics_db-len>0</Statistics_db-len>
180 <Statistics_hsp-len>16</Statistics_hsp-len>
181 <Statistics_eff-space>20482300</Statistics_eff-space>
182 <Statistics_kappa>0.46</Statistics_kappa>
183 <Statistics_lambda>1.28</Statistics_lambda>
184 <Statistics_entropy>0.85</Statistics_entropy>
185 </Statistics>
186 </Iteration_stat>
187 <Iteration_message>No hits found</Iteration_message>
188 </Iteration>
189 <Iteration>
190 <Iteration_iter-num>8</Iteration_iter-num>
191 <Iteration_query-ID>Query_3</Iteration_query-ID>
192 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
193 <Iteration_query-len>4301</Iteration_query-len>
194 <Iteration_hits>
195 </Iteration_hits>
196 <Iteration_stat>
197 <Statistics>
198 <Statistics_db-num>0</Statistics_db-num>
199 <Statistics_db-len>0</Statistics_db-len>
200 <Statistics_hsp-len>16</Statistics_hsp-len>
201 <Statistics_eff-space>20482300</Statistics_eff-space>
202 <Statistics_kappa>0.46</Statistics_kappa>
203 <Statistics_lambda>1.28</Statistics_lambda>
204 <Statistics_entropy>0.85</Statistics_entropy>
205 </Statistics>
206 </Iteration_stat>
207 <Iteration_message>No hits found</Iteration_message>
208 </Iteration>
209 <Iteration>
210 <Iteration_iter-num>9</Iteration_iter-num>
211 <Iteration_query-ID>Query_3</Iteration_query-ID>
212 <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
213 <Iteration_query-len>4301</Iteration_query-len>
214 <Iteration_hits>
215 <Hit> 95 <Hit>
216 <Hit_num>1</Hit_num> 96 <Hit_num>1</Hit_num>
217 <Hit_id>Subject_3</Hit_id> 97 <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
218 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> 98 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
219 <Hit_accession>Subject_3</Hit_accession> 99 <Hit_accession>Subject_3</Hit_accession>
220 <Hit_len>1213</Hit_len> 100 <Hit_len>1213</Hit_len>
221 <Hit_hsps> 101 <Hit_hsps>
222 <Hsp> 102 <Hsp>
223 <Hsp_num>1</Hsp_num> 103 <Hsp_num>1</Hsp_num>
224 <Hsp_bit-score>460.936</Hsp_bit-score> 104 <Hsp_bit-score>460.936</Hsp_bit-score>
225 <Hsp_score>249</Hsp_score> 105 <Hsp_score>249</Hsp_score>
226 <Hsp_evalue>3.59583e-132</Hsp_evalue> 106 <Hsp_evalue>8.03308e-132</Hsp_evalue>
227 <Hsp_query-from>1</Hsp_query-from> 107 <Hsp_query-from>1</Hsp_query-from>
228 <Hsp_query-to>333</Hsp_query-to> 108 <Hsp_query-to>333</Hsp_query-to>
229 <Hsp_hit-from>118</Hsp_hit-from> 109 <Hsp_hit-from>118</Hsp_hit-from>
230 <Hsp_hit-to>450</Hsp_hit-to> 110 <Hsp_hit-to>450</Hsp_hit-to>
231 <Hsp_query-frame>1</Hsp_query-frame> 111 <Hsp_query-frame>1</Hsp_query-frame>
240 </Hsp> 120 </Hsp>
241 <Hsp> 121 <Hsp>
242 <Hsp_num>2</Hsp_num> 122 <Hsp_num>2</Hsp_num>
243 <Hsp_bit-score>331.671</Hsp_bit-score> 123 <Hsp_bit-score>331.671</Hsp_bit-score>
244 <Hsp_score>179</Hsp_score> 124 <Hsp_score>179</Hsp_score>
245 <Hsp_evalue>2.94161e-93</Hsp_evalue> 125 <Hsp_evalue>6.57155e-93</Hsp_evalue>
246 <Hsp_query-from>3127</Hsp_query-from> 126 <Hsp_query-from>3127</Hsp_query-from>
247 <Hsp_query-to>3368</Hsp_query-to> 127 <Hsp_query-to>3368</Hsp_query-to>
248 <Hsp_hit-from>782</Hsp_hit-from> 128 <Hsp_hit-from>782</Hsp_hit-from>
249 <Hsp_hit-to>1023</Hsp_hit-to> 129 <Hsp_hit-to>1023</Hsp_hit-to>
250 <Hsp_query-frame>1</Hsp_query-frame> 130 <Hsp_query-frame>1</Hsp_query-frame>
259 </Hsp> 139 </Hsp>
260 <Hsp> 140 <Hsp>
261 <Hsp_num>3</Hsp_num> 141 <Hsp_num>3</Hsp_num>
262 <Hsp_bit-score>265.191</Hsp_bit-score> 142 <Hsp_bit-score>265.191</Hsp_bit-score>
263 <Hsp_score>143</Hsp_score> 143 <Hsp_score>143</Hsp_score>
264 <Hsp_evalue>3.02604e-73</Hsp_evalue> 144 <Hsp_evalue>6.76016e-73</Hsp_evalue>
265 <Hsp_query-from>1410</Hsp_query-from> 145 <Hsp_query-from>1410</Hsp_query-from>
266 <Hsp_query-to>1582</Hsp_query-to> 146 <Hsp_query-to>1582</Hsp_query-to>
267 <Hsp_hit-from>448</Hsp_hit-from> 147 <Hsp_hit-from>448</Hsp_hit-from>
268 <Hsp_hit-to>620</Hsp_hit-to> 148 <Hsp_hit-to>620</Hsp_hit-to>
269 <Hsp_query-frame>1</Hsp_query-frame> 149 <Hsp_query-frame>1</Hsp_query-frame>
278 </Hsp> 158 </Hsp>
279 <Hsp> 159 <Hsp>
280 <Hsp_num>4</Hsp_num> 160 <Hsp_num>4</Hsp_num>
281 <Hsp_bit-score>248.571</Hsp_bit-score> 161 <Hsp_bit-score>248.571</Hsp_bit-score>
282 <Hsp_score>134</Hsp_score> 162 <Hsp_score>134</Hsp_score>
283 <Hsp_evalue>3.04752e-68</Hsp_evalue> 163 <Hsp_evalue>6.80816e-68</Hsp_evalue>
284 <Hsp_query-from>2854</Hsp_query-from> 164 <Hsp_query-from>2854</Hsp_query-from>
285 <Hsp_query-to>3023</Hsp_query-to> 165 <Hsp_query-to>3023</Hsp_query-to>
286 <Hsp_hit-from>615</Hsp_hit-from> 166 <Hsp_hit-from>615</Hsp_hit-from>
287 <Hsp_hit-to>784</Hsp_hit-to> 167 <Hsp_hit-to>784</Hsp_hit-to>
288 <Hsp_query-frame>1</Hsp_query-frame> 168 <Hsp_query-frame>1</Hsp_query-frame>
300 </Iteration_hits> 180 </Iteration_hits>
301 <Iteration_stat> 181 <Iteration_stat>
302 <Statistics> 182 <Statistics>
303 <Statistics_db-num>0</Statistics_db-num> 183 <Statistics_db-num>0</Statistics_db-num>
304 <Statistics_db-len>0</Statistics_db-len> 184 <Statistics_db-len>0</Statistics_db-len>
305 <Statistics_hsp-len>16</Statistics_hsp-len> 185 <Statistics_hsp-len>17</Statistics_hsp-len>
306 <Statistics_eff-space>20482300</Statistics_eff-space> 186 <Statistics_eff-space>45757404</Statistics_eff-space>
307 <Statistics_kappa>0.46</Statistics_kappa> 187 <Statistics_kappa>0.46</Statistics_kappa>
308 <Statistics_lambda>1.28</Statistics_lambda> 188 <Statistics_lambda>1.28</Statistics_lambda>
309 <Statistics_entropy>0.85</Statistics_entropy> 189 <Statistics_entropy>0.85</Statistics_entropy>
310 </Statistics> 190 </Statistics>
311 </Iteration_stat> 191 </Iteration_stat>
312 </Iteration> 192 </Iteration>
313 <Iteration> 193 <Iteration>
314 <Iteration_iter-num>10</Iteration_iter-num> 194 <Iteration_iter-num>4</Iteration_iter-num>
315 <Iteration_query-ID>Query_4</Iteration_query-ID> 195 <Iteration_query-ID>Query_4</Iteration_query-ID>
316 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> 196 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
317 <Iteration_query-len>983</Iteration_query-len> 197 <Iteration_query-len>983</Iteration_query-len>
318 <Iteration_hits> 198 <Iteration_hits>
319 </Iteration_hits>
320 <Iteration_stat>
321 <Statistics>
322 <Statistics_db-num>0</Statistics_db-num>
323 <Statistics_db-len>0</Statistics_db-len>
324 <Statistics_hsp-len>15</Statistics_hsp-len>
325 <Statistics_eff-space>4628008</Statistics_eff-space>
326 <Statistics_kappa>0.46</Statistics_kappa>
327 <Statistics_lambda>1.28</Statistics_lambda>
328 <Statistics_entropy>0.85</Statistics_entropy>
329 </Statistics>
330 </Iteration_stat>
331 <Iteration_message>No hits found</Iteration_message>
332 </Iteration>
333 <Iteration>
334 <Iteration_iter-num>11</Iteration_iter-num>
335 <Iteration_query-ID>Query_4</Iteration_query-ID>
336 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
337 <Iteration_query-len>983</Iteration_query-len>
338 <Iteration_hits>
339 </Iteration_hits>
340 <Iteration_stat>
341 <Statistics>
342 <Statistics_db-num>0</Statistics_db-num>
343 <Statistics_db-len>0</Statistics_db-len>
344 <Statistics_hsp-len>15</Statistics_hsp-len>
345 <Statistics_eff-space>4628008</Statistics_eff-space>
346 <Statistics_kappa>0.46</Statistics_kappa>
347 <Statistics_lambda>1.28</Statistics_lambda>
348 <Statistics_entropy>0.85</Statistics_entropy>
349 </Statistics>
350 </Iteration_stat>
351 <Iteration_message>No hits found</Iteration_message>
352 </Iteration>
353 <Iteration>
354 <Iteration_iter-num>12</Iteration_iter-num>
355 <Iteration_query-ID>Query_4</Iteration_query-ID>
356 <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
357 <Iteration_query-len>983</Iteration_query-len>
358 <Iteration_hits>
359 <Hit> 199 <Hit>
360 <Hit_num>1</Hit_num> 200 <Hit_num>1</Hit_num>
361 <Hit_id>Subject_3</Hit_id> 201 <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
362 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> 202 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
363 <Hit_accession>Subject_3</Hit_accession> 203 <Hit_accession>Subject_3</Hit_accession>
364 <Hit_len>1213</Hit_len> 204 <Hit_len>1213</Hit_len>
365 <Hit_hsps> 205 <Hit_hsps>
366 <Hsp> 206 <Hsp>
387 </Iteration_hits> 227 </Iteration_hits>
388 <Iteration_stat> 228 <Iteration_stat>
389 <Statistics> 229 <Statistics>
390 <Statistics_db-num>0</Statistics_db-num> 230 <Statistics_db-num>0</Statistics_db-num>
391 <Statistics_db-len>0</Statistics_db-len> 231 <Statistics_db-len>0</Statistics_db-len>
392 <Statistics_hsp-len>15</Statistics_hsp-len> 232 <Statistics_hsp-len>16</Statistics_hsp-len>
393 <Statistics_eff-space>4628008</Statistics_eff-space> 233 <Statistics_eff-space>10331428</Statistics_eff-space>
394 <Statistics_kappa>0.46</Statistics_kappa> 234 <Statistics_kappa>0.46</Statistics_kappa>
395 <Statistics_lambda>1.28</Statistics_lambda> 235 <Statistics_lambda>1.28</Statistics_lambda>
396 <Statistics_entropy>0.85</Statistics_entropy> 236 <Statistics_entropy>0.85</Statistics_entropy>
397 </Statistics> 237 </Statistics>
398 </Iteration_stat> 238 </Iteration_stat>
399 </Iteration> 239 </Iteration>
400 <Iteration> 240 <Iteration>
401 <Iteration_iter-num>13</Iteration_iter-num> 241 <Iteration_iter-num>5</Iteration_iter-num>
402 <Iteration_query-ID>Query_5</Iteration_query-ID> 242 <Iteration_query-ID>Query_5</Iteration_query-ID>
403 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> 243 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
404 <Iteration_query-len>1047</Iteration_query-len> 244 <Iteration_query-len>1047</Iteration_query-len>
405 <Iteration_hits> 245 <Iteration_hits>
406 </Iteration_hits>
407 <Iteration_stat>
408 <Statistics>
409 <Statistics_db-num>0</Statistics_db-num>
410 <Statistics_db-len>0</Statistics_db-len>
411 <Statistics_hsp-len>15</Statistics_hsp-len>
412 <Statistics_eff-space>4933992</Statistics_eff-space>
413 <Statistics_kappa>0.46</Statistics_kappa>
414 <Statistics_lambda>1.28</Statistics_lambda>
415 <Statistics_entropy>0.85</Statistics_entropy>
416 </Statistics>
417 </Iteration_stat>
418 <Iteration_message>No hits found</Iteration_message>
419 </Iteration>
420 <Iteration>
421 <Iteration_iter-num>14</Iteration_iter-num>
422 <Iteration_query-ID>Query_5</Iteration_query-ID>
423 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
424 <Iteration_query-len>1047</Iteration_query-len>
425 <Iteration_hits>
426 </Iteration_hits>
427 <Iteration_stat>
428 <Statistics>
429 <Statistics_db-num>0</Statistics_db-num>
430 <Statistics_db-len>0</Statistics_db-len>
431 <Statistics_hsp-len>15</Statistics_hsp-len>
432 <Statistics_eff-space>4933992</Statistics_eff-space>
433 <Statistics_kappa>0.46</Statistics_kappa>
434 <Statistics_lambda>1.28</Statistics_lambda>
435 <Statistics_entropy>0.85</Statistics_entropy>
436 </Statistics>
437 </Iteration_stat>
438 <Iteration_message>No hits found</Iteration_message>
439 </Iteration>
440 <Iteration>
441 <Iteration_iter-num>15</Iteration_iter-num>
442 <Iteration_query-ID>Query_5</Iteration_query-ID>
443 <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
444 <Iteration_query-len>1047</Iteration_query-len>
445 <Iteration_hits>
446 <Hit> 246 <Hit>
447 <Hit_num>1</Hit_num> 247 <Hit_num>1</Hit_num>
448 <Hit_id>Subject_3</Hit_id> 248 <Hit_id>ENA|BC112106|BC112106.1</Hit_id>
449 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def> 249 <Hit_def>ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds</Hit_def>
450 <Hit_accession>Subject_3</Hit_accession> 250 <Hit_accession>Subject_3</Hit_accession>
451 <Hit_len>1213</Hit_len> 251 <Hit_len>1213</Hit_len>
452 <Hit_hsps> 252 <Hit_hsps>
453 <Hsp> 253 <Hsp>
474 </Iteration_hits> 274 </Iteration_hits>
475 <Iteration_stat> 275 <Iteration_stat>
476 <Statistics> 276 <Statistics>
477 <Statistics_db-num>0</Statistics_db-num> 277 <Statistics_db-num>0</Statistics_db-num>
478 <Statistics_db-len>0</Statistics_db-len> 278 <Statistics_db-len>0</Statistics_db-len>
479 <Statistics_hsp-len>15</Statistics_hsp-len> 279 <Statistics_hsp-len>16</Statistics_hsp-len>
480 <Statistics_eff-space>4933992</Statistics_eff-space> 280 <Statistics_eff-space>11015204</Statistics_eff-space>
481 <Statistics_kappa>0.46</Statistics_kappa> 281 <Statistics_kappa>0.46</Statistics_kappa>
482 <Statistics_lambda>1.28</Statistics_lambda> 282 <Statistics_lambda>1.28</Statistics_lambda>
483 <Statistics_entropy>0.85</Statistics_entropy> 283 <Statistics_entropy>0.85</Statistics_entropy>
484 </Statistics> 284 </Statistics>
485 </Iteration_stat> 285 </Iteration_stat>
486 </Iteration> 286 </Iteration>
487 <Iteration> 287 <Iteration>
488 <Iteration_iter-num>16</Iteration_iter-num> 288 <Iteration_iter-num>6</Iteration_iter-num>
489 <Iteration_query-ID>Query_6</Iteration_query-ID> 289 <Iteration_query-ID>Query_6</Iteration_query-ID>
490 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> 290 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
491 <Iteration_query-len>1344</Iteration_query-len> 291 <Iteration_query-len>1344</Iteration_query-len>
492 <Iteration_hits> 292 <Iteration_hits>
493 </Iteration_hits> 293 </Iteration_hits>
494 <Iteration_stat> 294 <Iteration_stat>
495 <Statistics> 295 <Statistics>
496 <Statistics_db-num>0</Statistics_db-num> 296 <Statistics_db-num>0</Statistics_db-num>
497 <Statistics_db-len>0</Statistics_db-len> 297 <Statistics_db-len>0</Statistics_db-len>
498 <Statistics_hsp-len>15</Statistics_hsp-len> 298 <Statistics_hsp-len>16</Statistics_hsp-len>
499 <Statistics_eff-space>6353949</Statistics_eff-space> 299 <Statistics_eff-space>14188352</Statistics_eff-space>
500 <Statistics_kappa>0.46</Statistics_kappa>
501 <Statistics_lambda>1.28</Statistics_lambda>
502 <Statistics_entropy>0.85</Statistics_entropy>
503 </Statistics>
504 </Iteration_stat>
505 <Iteration_message>No hits found</Iteration_message>
506 </Iteration>
507 <Iteration>
508 <Iteration_iter-num>17</Iteration_iter-num>
509 <Iteration_query-ID>Query_6</Iteration_query-ID>
510 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
511 <Iteration_query-len>1344</Iteration_query-len>
512 <Iteration_hits>
513 </Iteration_hits>
514 <Iteration_stat>
515 <Statistics>
516 <Statistics_db-num>0</Statistics_db-num>
517 <Statistics_db-len>0</Statistics_db-len>
518 <Statistics_hsp-len>15</Statistics_hsp-len>
519 <Statistics_eff-space>6353949</Statistics_eff-space>
520 <Statistics_kappa>0.46</Statistics_kappa>
521 <Statistics_lambda>1.28</Statistics_lambda>
522 <Statistics_entropy>0.85</Statistics_entropy>
523 </Statistics>
524 </Iteration_stat>
525 <Iteration_message>No hits found</Iteration_message>
526 </Iteration>
527 <Iteration>
528 <Iteration_iter-num>18</Iteration_iter-num>
529 <Iteration_query-ID>Query_6</Iteration_query-ID>
530 <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
531 <Iteration_query-len>1344</Iteration_query-len>
532 <Iteration_hits>
533 </Iteration_hits>
534 <Iteration_stat>
535 <Statistics>
536 <Statistics_db-num>0</Statistics_db-num>
537 <Statistics_db-len>0</Statistics_db-len>
538 <Statistics_hsp-len>15</Statistics_hsp-len>
539 <Statistics_eff-space>6353949</Statistics_eff-space>
540 <Statistics_kappa>0.46</Statistics_kappa> 300 <Statistics_kappa>0.46</Statistics_kappa>
541 <Statistics_lambda>1.28</Statistics_lambda> 301 <Statistics_lambda>1.28</Statistics_lambda>
542 <Statistics_entropy>0.85</Statistics_entropy> 302 <Statistics_entropy>0.85</Statistics_entropy>
543 </Statistics> 303 </Statistics>
544 </Iteration_stat> 304 </Iteration_stat>