Mercurial > repos > devteam > ncbi_blast_plus
comparison tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml @ 19:7f3c448e119b draft
v0.1.07 - fix macro problem in blastxml_to_tabular.xml, reenable .loc tests
| author | peterjc |
|---|---|
| date | Thu, 19 Nov 2015 06:30:35 -0500 |
| parents | 697f40151eaf |
| children | 3034ce97dd33 |
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| 18:577d9c12411a | 19:7f3c448e119b |
|---|---|
| 100 <param name="std_cols" value="qseqid,sseqid,pident" /> | 100 <param name="std_cols" value="qseqid,sseqid,pident" /> |
| 101 <param name="ext_cols" value="qlen,slen" /> | 101 <param name="ext_cols" value="qlen,slen" /> |
| 102 <param name="adv_opts_selector" value="basic" /> | 102 <param name="adv_opts_selector" value="basic" /> |
| 103 <output name="output1" file="blastn_rhodopsin_vs_three_human.columns.tabular" ftype="tabular" /> | 103 <output name="output1" file="blastn_rhodopsin_vs_three_human.columns.tabular" ftype="tabular" /> |
| 104 </test> | 104 </test> |
| 105 <!-- Disable for ToolShed where *.loc tests not yet supported | |
| 106 See https://github.com/peterjc/galaxy_blast/issues/53 | |
| 107 <test> | 105 <test> |
| 108 <param name="query" value="chimera.fasta" ftype="fasta" /> | 106 <param name="query" value="chimera.fasta" ftype="fasta" /> |
| 109 <param name="db_opts_selector" value="db" /> | 107 <param name="db_opts_selector" value="db" /> |
| 110 <param name="database" value="three_human_mRNA" /> | 108 <param name="database" value="three_human_mRNA" /> |
| 111 <param name="out_format" value="6" /> | 109 <param name="out_format" value="6" /> |
| 120 <param name="out_format" value="0" /> | 118 <param name="out_format" value="0" /> |
| 121 <param name="adv_opts_selector" value="advanced" /> | 119 <param name="adv_opts_selector" value="advanced" /> |
| 122 <param name="max_hits" value="1" /> | 120 <param name="max_hits" value="1" /> |
| 123 <output name="output1" file="blastn_chimera_vs_three_human_max1.txt" ftype="txt" /> | 121 <output name="output1" file="blastn_chimera_vs_three_human_max1.txt" ftype="txt" /> |
| 124 </test> | 122 </test> |
| 125 --> | |
| 126 </tests> | 123 </tests> |
| 127 <help> | 124 <help> |
| 128 | 125 |
| 129 @SEARCH_TIME_WARNING@ | 126 @SEARCH_TIME_WARNING@ |
| 130 | 127 |