Mercurial > repos > devteam > ncbi_blast_plus
comparison tool-data/blastdb_p.loc.sample @ 9:9dabbfd73c8a draft
Uploaded v0.0.19, adds wrappers for rpsblast and rpstblastn with new blastdb_d.loc file for their protein domain database.
Also includes other minor improvements.
author | peterjc |
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date | Thu, 25 Apr 2013 09:38:37 -0400 |
parents | |
children | c16c30e9ad5b |
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8:1f546099212f | 9:9dabbfd73c8a |
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1 #This is a sample file distributed with Galaxy that is used to define a | |
2 #list of protein BLAST databases, using three columns tab separated | |
3 #(longer whitespace are TAB characters): | |
4 # | |
5 #<unique_id> <database_caption> <base_name_path> | |
6 # | |
7 #The captions typically contain spaces and might end with the build date. | |
8 #It is important that the actual database name does not have a space in | |
9 #it, and that there are only two tabs on each line. | |
10 # | |
11 #So, for example, if your database is NR and the path to your base name | |
12 #is /data/blastdb/nr, then the blastdb_p.loc entry would look like this: | |
13 # | |
14 #nr{tab}NCBI NR (non redundant){tab}/data/blastdb/nr | |
15 # | |
16 #and your /data/blastdb directory would contain all of the files associated | |
17 #with the database, /data/blastdb/nr.*. | |
18 # | |
19 #Your blastdb_p.loc file should include an entry per line for each "base name" | |
20 #you have stored. For example: | |
21 # | |
22 #nr_05Jun2010 NCBI NR (non redundant) 05 Jun 2010 /data/blastdb/05Jun2010/nr | |
23 #nr_15Aug2010 NCBI NR (non redundant) 15 Aug 2010 /data/blastdb/15Aug2010/nr | |
24 #...etc... | |
25 # | |
26 #You can download the NCBI provided protein databases like NR from here: | |
27 #ftp://ftp.ncbi.nlm.nih.gov/blast/db/ | |
28 # | |
29 #See also blastdb.loc which is for any nucleotide BLAST database, and | |
30 #blastdb_d.loc which is for any protein domains databases (like CDD). |