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comparison test-data/tblastn_four_human_vs_rhodopsin.html @ 32:a52d2d93e595 draft

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Update for NCBI BLAST+ 2.14.1
author peterjc
date Thu, 26 Oct 2023 12:25:07 +0000
parents 5edc472ec434
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31:0e3cf9594bb7 32:a52d2d93e595
1 <HTML> 1 <HTML>
2 <HEAD><TITLE>BLAST Search Results</TITLE></HEAD> 2 <HEAD><TITLE>BLAST Search Results</TITLE></HEAD>
3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
4 <PRE> 4 <PRE>
5 5
6 <b>TBLASTN 2.10.1+</b> 6 <b>TBLASTN 2.14.1+</b>
7 7
8 8
9 <b><a 9 <b><a
10 href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=R 10 href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=R
11 etrieve&list_uids=9254694&dopt=Citation">Reference</a>:</b> 11 etrieve&list_uids=9254694&dopt=Citation">Reference</a>:</b>
87 Score E 87 Score E
88 Sequences producing significant alignments: (Bits) Value 88 Sequences producing significant alignments: (Bits) Value
89 89
90 gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA <a href=#Subject_1>732</a> 0.0 90 gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA <a href=#Subject_1>732</a> 0.0
91 gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene f... <a href=#Subject_5>711</a> 0.0 91 gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene f... <a href=#Subject_5>711</a> 0.0
92 gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodops... <a href=#Subject_4>658</a> 0.0 92 gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodops... <a href=#Subject_4>682</a> 0.0
93 gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complet... <a href=#Subject_2>646</a> 0.0 93 gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complet... <a href=#Subject_2>646</a> 0.0
94 gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh ... <a href=#Subject_6>626</a> 0.0 94 gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh ... <a href=#Subject_6>626</a> 0.0
95 gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 2002043... <a href=#Subject_3>229</a> 3e-67 95 gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 2002043... <a href=#Subject_3>229</a> 3e-67
96 96
97 97
163 163
164 ><a name=Subject_4></a> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin 164 ><a name=Subject_4></a> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
165 (RHO) mRNA, partial cds 165 (RHO) mRNA, partial cds
166 Length=983 166 Length=983
167 167
168 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. 168 Score = 682 bits (1573), Expect = 0.0, Method: Compositional matrix adjust.
169 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%) 169 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
170 Frame = +1 170 Frame = +1
171 171
172 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 172 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70
173 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 173 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT