Mercurial > repos > devteam > ncbi_blast_plus
comparison tools/ncbi_blast_plus/ncbi_makeblastdb.xml @ 32:a52d2d93e595 draft
Update for NCBI BLAST+ 2.14.1
| author | peterjc |
|---|---|
| date | Thu, 26 Oct 2023 12:25:07 +0000 |
| parents | 0e3cf9594bb7 |
| children | b6893f57f8d8 |
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| 31:0e3cf9594bb7 | 32:a52d2d93e595 |
|---|---|
| 50 ## -------------------------------------------------------------------- | 50 ## -------------------------------------------------------------------- |
| 51 ## Taxonomy | 51 ## Taxonomy |
| 52 ## -------------------------------------------------------------------- | 52 ## -------------------------------------------------------------------- |
| 53 #if $tax.taxselect == 'id': | 53 #if $tax.taxselect == 'id': |
| 54 -taxid $tax.taxid | 54 -taxid $tax.taxid |
| 55 ## TODO - Can we use a tabular file for the taxonomy mapping? | |
| 56 ## #else if $tax.taxselect == 'map': | 55 ## #else if $tax.taxselect == 'map': |
| 57 ## -taxid_map $tax.taxmap | 56 ## -taxid_map $tax.taxmap |
| 58 #end if | 57 #end if |
| 59 ## -------------------------------------------------------------------- | 58 ## -------------------------------------------------------------------- |
| 60 ## Capture the stdout log information to the primary file (plain text): | 59 ## Capture the stdout log information to the primary file (plain text): |
| 82 <param name="taxselect" type="select" label="Taxonomy options"> | 81 <param name="taxselect" type="select" label="Taxonomy options"> |
| 83 <option value="">Do not assign a Taxonomy ID to the sequences</option> | 82 <option value="">Do not assign a Taxonomy ID to the sequences</option> |
| 84 <option value="id">Assign the same Taxonomy ID to all the sequences</option> | 83 <option value="id">Assign the same Taxonomy ID to all the sequences</option> |
| 85 <!-- | 84 <!-- |
| 86 <option value="map">Supply text file mapping sequence IDs to taxnomy IDs</option> | 85 <option value="map">Supply text file mapping sequence IDs to taxnomy IDs</option> |
| 86 TODO - Can we use a tabular file for the taxonomy mapping? | |
| 87 --> | 87 --> |
| 88 </param> | 88 </param> |
| 89 <when value=""> | 89 <when value=""> |
| 90 </when> | 90 </when> |
| 91 <when value="id"> | 91 <when value="id"> |