Mercurial > repos > devteam > ncbi_blast_plus
comparison tools/ncbi_blast_plus/blastxml_to_tabular.py @ 24:c877294f8025 draft
Fixed tool_dependencies.xml
author | peterjc |
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date | Mon, 09 Jul 2018 10:08:16 -0400 |
parents | 31e517610e1f |
children | e25d3acf6e68 |
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23:31e517610e1f | 24:c877294f8025 |
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176 sys.exit("Invalid data format.") | 176 sys.exit("Invalid data format.") |
177 # turn it into an iterator | 177 # turn it into an iterator |
178 context = iter(context) | 178 context = iter(context) |
179 # get the root element | 179 # get the root element |
180 try: | 180 try: |
181 event, root = context.next() | 181 event, root = next(context) |
182 except Exception: | 182 except Exception: |
183 sys.exit("Invalid data format.") | 183 sys.exit("Invalid data format.") |
184 for event, elem in context: | 184 for event, elem in context: |
185 if event == "end" and elem.tag == "BlastOutput_program": | 185 if event == "end" and elem.tag == "BlastOutput_program": |
186 blast_program = elem.text | 186 blast_program = elem.text |