comparison blastdb_p.loc.sample @ 0:d375502056f1 draft

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author devteam
date Fri, 17 Aug 2012 09:11:43 -0400
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1 #This is a sample file distributed with Galaxy that is used to define a
2 #list of protein BLAST databases, using three columns tab separated
3 #(longer whitespace are TAB characters):
4 #
5 #<unique_id> <database_caption> <base_name_path>
6 #
7 #The captions typically contain spaces and might end with the build date.
8 #It is important that the actual database name does not have a space in it,
9 #and that the first tab that appears in the line is right before the path.
10 #
11 #So, for example, if your database is NR and the path to your base name
12 #is /data/blastdb/nr, then the blastdb_p.loc entry would look like this:
13 #
14 #nr NCBI NR (non redundant) /data/blastdb/nr
15 #
16 #and your /data/blastdb directory would contain all of the files associated
17 #with the database, /data/blastdb/nr.*.
18 #
19 #Your blastdb_p.loc file should include an entry per line for each "base name"
20 #you have stored. For example:
21 #
22 #nr_05Jun2010 NCBI NR (non redundant) 05 Jun 2010 /data/blastdb/05Jun2010/nr
23 #nr_15Aug2010 NCBI NR (non redundant) 15 Aug 2010 /data/blastdb/15Aug2010/nr
24 #...etc...
25 #
26 #See also blastdb.loc which is for any nucleotide BLAST database.
27 #