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comparison test-data/tblastn_four_human_vs_rhodopsin.xml @ 0:d375502056f1 draft

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date Fri, 17 Aug 2012 09:11:43 -0400
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1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
3 <BlastOutput>
4 <BlastOutput_program>tblastn</BlastOutput_program>
5 <BlastOutput_version>TBLASTN 2.2.25+</BlastOutput_version>
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db></BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def>
10 <BlastOutput_query-len>406</BlastOutput_query-len>
11 <BlastOutput_param>
12 <Parameters>
13 <Parameters_matrix>BLOSUM80</Parameters_matrix>
14 <Parameters_expect>1e-10</Parameters_expect>
15 <Parameters_gap-open>10</Parameters_gap-open>
16 <Parameters_gap-extend>1</Parameters_gap-extend>
17 <Parameters_filter>F</Parameters_filter>
18 </Parameters>
19 </BlastOutput_param>
20 <BlastOutput_iterations>
21 <Iteration>
22 <Iteration_iter-num>1</Iteration_iter-num>
23 <Iteration_query-ID>Query_1</Iteration_query-ID>
24 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
25 <Iteration_query-len>406</Iteration_query-len>
26 <Iteration_hits></Iteration_hits>
27 <Iteration_stat>
28 <Statistics>
29 <Statistics_db-num>0</Statistics_db-num>
30 <Statistics_db-len>0</Statistics_db-len>
31 <Statistics_hsp-len>19</Statistics_hsp-len>
32 <Statistics_eff-space>127710</Statistics_eff-space>
33 <Statistics_kappa>0.071</Statistics_kappa>
34 <Statistics_lambda>0.299</Statistics_lambda>
35 <Statistics_entropy>0.27</Statistics_entropy>
36 </Statistics>
37 </Iteration_stat>
38 <Iteration_message>No hits found</Iteration_message>
39 </Iteration>
40 <Iteration>
41 <Iteration_iter-num>2</Iteration_iter-num>
42 <Iteration_query-ID>Query_1</Iteration_query-ID>
43 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
44 <Iteration_query-len>406</Iteration_query-len>
45 <Iteration_hits></Iteration_hits>
46 <Iteration_stat>
47 <Statistics>
48 <Statistics_db-num>0</Statistics_db-num>
49 <Statistics_db-len>0</Statistics_db-len>
50 <Statistics_hsp-len>19</Statistics_hsp-len>
51 <Statistics_eff-space>127710</Statistics_eff-space>
52 <Statistics_kappa>0.071</Statistics_kappa>
53 <Statistics_lambda>0.299</Statistics_lambda>
54 <Statistics_entropy>0.27</Statistics_entropy>
55 </Statistics>
56 </Iteration_stat>
57 <Iteration_message>No hits found</Iteration_message>
58 </Iteration>
59 <Iteration>
60 <Iteration_iter-num>3</Iteration_iter-num>
61 <Iteration_query-ID>Query_1</Iteration_query-ID>
62 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
63 <Iteration_query-len>406</Iteration_query-len>
64 <Iteration_hits></Iteration_hits>
65 <Iteration_stat>
66 <Statistics>
67 <Statistics_db-num>0</Statistics_db-num>
68 <Statistics_db-len>0</Statistics_db-len>
69 <Statistics_hsp-len>19</Statistics_hsp-len>
70 <Statistics_eff-space>127710</Statistics_eff-space>
71 <Statistics_kappa>0.071</Statistics_kappa>
72 <Statistics_lambda>0.299</Statistics_lambda>
73 <Statistics_entropy>0.27</Statistics_entropy>
74 </Statistics>
75 </Iteration_stat>
76 <Iteration_message>No hits found</Iteration_message>
77 </Iteration>
78 <Iteration>
79 <Iteration_iter-num>4</Iteration_iter-num>
80 <Iteration_query-ID>Query_1</Iteration_query-ID>
81 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
82 <Iteration_query-len>406</Iteration_query-len>
83 <Iteration_hits></Iteration_hits>
84 <Iteration_stat>
85 <Statistics>
86 <Statistics_db-num>0</Statistics_db-num>
87 <Statistics_db-len>0</Statistics_db-len>
88 <Statistics_hsp-len>19</Statistics_hsp-len>
89 <Statistics_eff-space>127710</Statistics_eff-space>
90 <Statistics_kappa>0.071</Statistics_kappa>
91 <Statistics_lambda>0.299</Statistics_lambda>
92 <Statistics_entropy>0.27</Statistics_entropy>
93 </Statistics>
94 </Iteration_stat>
95 <Iteration_message>No hits found</Iteration_message>
96 </Iteration>
97 <Iteration>
98 <Iteration_iter-num>5</Iteration_iter-num>
99 <Iteration_query-ID>Query_1</Iteration_query-ID>
100 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
101 <Iteration_query-len>406</Iteration_query-len>
102 <Iteration_hits></Iteration_hits>
103 <Iteration_stat>
104 <Statistics>
105 <Statistics_db-num>0</Statistics_db-num>
106 <Statistics_db-len>0</Statistics_db-len>
107 <Statistics_hsp-len>19</Statistics_hsp-len>
108 <Statistics_eff-space>127710</Statistics_eff-space>
109 <Statistics_kappa>0.071</Statistics_kappa>
110 <Statistics_lambda>0.299</Statistics_lambda>
111 <Statistics_entropy>0.27</Statistics_entropy>
112 </Statistics>
113 </Iteration_stat>
114 <Iteration_message>No hits found</Iteration_message>
115 </Iteration>
116 <Iteration>
117 <Iteration_iter-num>6</Iteration_iter-num>
118 <Iteration_query-ID>Query_1</Iteration_query-ID>
119 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def>
120 <Iteration_query-len>406</Iteration_query-len>
121 <Iteration_hits></Iteration_hits>
122 <Iteration_stat>
123 <Statistics>
124 <Statistics_db-num>0</Statistics_db-num>
125 <Statistics_db-len>0</Statistics_db-len>
126 <Statistics_hsp-len>19</Statistics_hsp-len>
127 <Statistics_eff-space>127710</Statistics_eff-space>
128 <Statistics_kappa>0.071</Statistics_kappa>
129 <Statistics_lambda>0.299</Statistics_lambda>
130 <Statistics_entropy>0.27</Statistics_entropy>
131 </Statistics>
132 </Iteration_stat>
133 <Iteration_message>No hits found</Iteration_message>
134 </Iteration>
135 <Iteration>
136 <Iteration_iter-num>7</Iteration_iter-num>
137 <Iteration_query-ID>Query_2</Iteration_query-ID>
138 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
139 <Iteration_query-len>1161</Iteration_query-len>
140 <Iteration_hits></Iteration_hits>
141 <Iteration_stat>
142 <Statistics>
143 <Statistics_db-num>0</Statistics_db-num>
144 <Statistics_db-len>0</Statistics_db-len>
145 <Statistics_hsp-len>23</Statistics_hsp-len>
146 <Statistics_eff-space>370988</Statistics_eff-space>
147 <Statistics_kappa>0.071</Statistics_kappa>
148 <Statistics_lambda>0.299</Statistics_lambda>
149 <Statistics_entropy>0.27</Statistics_entropy>
150 </Statistics>
151 </Iteration_stat>
152 <Iteration_message>No hits found</Iteration_message>
153 </Iteration>
154 <Iteration>
155 <Iteration_iter-num>8</Iteration_iter-num>
156 <Iteration_query-ID>Query_2</Iteration_query-ID>
157 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
158 <Iteration_query-len>1161</Iteration_query-len>
159 <Iteration_hits></Iteration_hits>
160 <Iteration_stat>
161 <Statistics>
162 <Statistics_db-num>0</Statistics_db-num>
163 <Statistics_db-len>0</Statistics_db-len>
164 <Statistics_hsp-len>23</Statistics_hsp-len>
165 <Statistics_eff-space>370988</Statistics_eff-space>
166 <Statistics_kappa>0.071</Statistics_kappa>
167 <Statistics_lambda>0.299</Statistics_lambda>
168 <Statistics_entropy>0.27</Statistics_entropy>
169 </Statistics>
170 </Iteration_stat>
171 <Iteration_message>No hits found</Iteration_message>
172 </Iteration>
173 <Iteration>
174 <Iteration_iter-num>9</Iteration_iter-num>
175 <Iteration_query-ID>Query_2</Iteration_query-ID>
176 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
177 <Iteration_query-len>1161</Iteration_query-len>
178 <Iteration_hits></Iteration_hits>
179 <Iteration_stat>
180 <Statistics>
181 <Statistics_db-num>0</Statistics_db-num>
182 <Statistics_db-len>0</Statistics_db-len>
183 <Statistics_hsp-len>23</Statistics_hsp-len>
184 <Statistics_eff-space>370988</Statistics_eff-space>
185 <Statistics_kappa>0.071</Statistics_kappa>
186 <Statistics_lambda>0.299</Statistics_lambda>
187 <Statistics_entropy>0.27</Statistics_entropy>
188 </Statistics>
189 </Iteration_stat>
190 <Iteration_message>No hits found</Iteration_message>
191 </Iteration>
192 <Iteration>
193 <Iteration_iter-num>10</Iteration_iter-num>
194 <Iteration_query-ID>Query_2</Iteration_query-ID>
195 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
196 <Iteration_query-len>1161</Iteration_query-len>
197 <Iteration_hits></Iteration_hits>
198 <Iteration_stat>
199 <Statistics>
200 <Statistics_db-num>0</Statistics_db-num>
201 <Statistics_db-len>0</Statistics_db-len>
202 <Statistics_hsp-len>23</Statistics_hsp-len>
203 <Statistics_eff-space>370988</Statistics_eff-space>
204 <Statistics_kappa>0.071</Statistics_kappa>
205 <Statistics_lambda>0.299</Statistics_lambda>
206 <Statistics_entropy>0.27</Statistics_entropy>
207 </Statistics>
208 </Iteration_stat>
209 <Iteration_message>No hits found</Iteration_message>
210 </Iteration>
211 <Iteration>
212 <Iteration_iter-num>11</Iteration_iter-num>
213 <Iteration_query-ID>Query_2</Iteration_query-ID>
214 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
215 <Iteration_query-len>1161</Iteration_query-len>
216 <Iteration_hits></Iteration_hits>
217 <Iteration_stat>
218 <Statistics>
219 <Statistics_db-num>0</Statistics_db-num>
220 <Statistics_db-len>0</Statistics_db-len>
221 <Statistics_hsp-len>23</Statistics_hsp-len>
222 <Statistics_eff-space>370988</Statistics_eff-space>
223 <Statistics_kappa>0.071</Statistics_kappa>
224 <Statistics_lambda>0.299</Statistics_lambda>
225 <Statistics_entropy>0.27</Statistics_entropy>
226 </Statistics>
227 </Iteration_stat>
228 <Iteration_message>No hits found</Iteration_message>
229 </Iteration>
230 <Iteration>
231 <Iteration_iter-num>12</Iteration_iter-num>
232 <Iteration_query-ID>Query_2</Iteration_query-ID>
233 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def>
234 <Iteration_query-len>1161</Iteration_query-len>
235 <Iteration_hits></Iteration_hits>
236 <Iteration_stat>
237 <Statistics>
238 <Statistics_db-num>0</Statistics_db-num>
239 <Statistics_db-len>0</Statistics_db-len>
240 <Statistics_hsp-len>23</Statistics_hsp-len>
241 <Statistics_eff-space>370988</Statistics_eff-space>
242 <Statistics_kappa>0.071</Statistics_kappa>
243 <Statistics_lambda>0.299</Statistics_lambda>
244 <Statistics_entropy>0.27</Statistics_entropy>
245 </Statistics>
246 </Iteration_stat>
247 <Iteration_message>No hits found</Iteration_message>
248 </Iteration>
249 <Iteration>
250 <Iteration_iter-num>13</Iteration_iter-num>
251 <Iteration_query-ID>Query_3</Iteration_query-ID>
252 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
253 <Iteration_query-len>1382</Iteration_query-len>
254 <Iteration_hits></Iteration_hits>
255 <Iteration_stat>
256 <Statistics>
257 <Statistics_db-num>0</Statistics_db-num>
258 <Statistics_db-len>0</Statistics_db-len>
259 <Statistics_hsp-len>24</Statistics_hsp-len>
260 <Statistics_eff-space>441350</Statistics_eff-space>
261 <Statistics_kappa>0.071</Statistics_kappa>
262 <Statistics_lambda>0.299</Statistics_lambda>
263 <Statistics_entropy>0.27</Statistics_entropy>
264 </Statistics>
265 </Iteration_stat>
266 <Iteration_message>No hits found</Iteration_message>
267 </Iteration>
268 <Iteration>
269 <Iteration_iter-num>14</Iteration_iter-num>
270 <Iteration_query-ID>Query_3</Iteration_query-ID>
271 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
272 <Iteration_query-len>1382</Iteration_query-len>
273 <Iteration_hits></Iteration_hits>
274 <Iteration_stat>
275 <Statistics>
276 <Statistics_db-num>0</Statistics_db-num>
277 <Statistics_db-len>0</Statistics_db-len>
278 <Statistics_hsp-len>24</Statistics_hsp-len>
279 <Statistics_eff-space>441350</Statistics_eff-space>
280 <Statistics_kappa>0.071</Statistics_kappa>
281 <Statistics_lambda>0.299</Statistics_lambda>
282 <Statistics_entropy>0.27</Statistics_entropy>
283 </Statistics>
284 </Iteration_stat>
285 <Iteration_message>No hits found</Iteration_message>
286 </Iteration>
287 <Iteration>
288 <Iteration_iter-num>15</Iteration_iter-num>
289 <Iteration_query-ID>Query_3</Iteration_query-ID>
290 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
291 <Iteration_query-len>1382</Iteration_query-len>
292 <Iteration_hits></Iteration_hits>
293 <Iteration_stat>
294 <Statistics>
295 <Statistics_db-num>0</Statistics_db-num>
296 <Statistics_db-len>0</Statistics_db-len>
297 <Statistics_hsp-len>24</Statistics_hsp-len>
298 <Statistics_eff-space>441350</Statistics_eff-space>
299 <Statistics_kappa>0.071</Statistics_kappa>
300 <Statistics_lambda>0.299</Statistics_lambda>
301 <Statistics_entropy>0.27</Statistics_entropy>
302 </Statistics>
303 </Iteration_stat>
304 <Iteration_message>No hits found</Iteration_message>
305 </Iteration>
306 <Iteration>
307 <Iteration_iter-num>16</Iteration_iter-num>
308 <Iteration_query-ID>Query_3</Iteration_query-ID>
309 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
310 <Iteration_query-len>1382</Iteration_query-len>
311 <Iteration_hits></Iteration_hits>
312 <Iteration_stat>
313 <Statistics>
314 <Statistics_db-num>0</Statistics_db-num>
315 <Statistics_db-len>0</Statistics_db-len>
316 <Statistics_hsp-len>24</Statistics_hsp-len>
317 <Statistics_eff-space>441350</Statistics_eff-space>
318 <Statistics_kappa>0.071</Statistics_kappa>
319 <Statistics_lambda>0.299</Statistics_lambda>
320 <Statistics_entropy>0.27</Statistics_entropy>
321 </Statistics>
322 </Iteration_stat>
323 <Iteration_message>No hits found</Iteration_message>
324 </Iteration>
325 <Iteration>
326 <Iteration_iter-num>17</Iteration_iter-num>
327 <Iteration_query-ID>Query_3</Iteration_query-ID>
328 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
329 <Iteration_query-len>1382</Iteration_query-len>
330 <Iteration_hits></Iteration_hits>
331 <Iteration_stat>
332 <Statistics>
333 <Statistics_db-num>0</Statistics_db-num>
334 <Statistics_db-len>0</Statistics_db-len>
335 <Statistics_hsp-len>24</Statistics_hsp-len>
336 <Statistics_eff-space>441350</Statistics_eff-space>
337 <Statistics_kappa>0.071</Statistics_kappa>
338 <Statistics_lambda>0.299</Statistics_lambda>
339 <Statistics_entropy>0.27</Statistics_entropy>
340 </Statistics>
341 </Iteration_stat>
342 <Iteration_message>No hits found</Iteration_message>
343 </Iteration>
344 <Iteration>
345 <Iteration_iter-num>18</Iteration_iter-num>
346 <Iteration_query-ID>Query_3</Iteration_query-ID>
347 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def>
348 <Iteration_query-len>1382</Iteration_query-len>
349 <Iteration_hits></Iteration_hits>
350 <Iteration_stat>
351 <Statistics>
352 <Statistics_db-num>0</Statistics_db-num>
353 <Statistics_db-len>0</Statistics_db-len>
354 <Statistics_hsp-len>24</Statistics_hsp-len>
355 <Statistics_eff-space>441350</Statistics_eff-space>
356 <Statistics_kappa>0.071</Statistics_kappa>
357 <Statistics_lambda>0.299</Statistics_lambda>
358 <Statistics_entropy>0.27</Statistics_entropy>
359 </Statistics>
360 </Iteration_stat>
361 <Iteration_message>No hits found</Iteration_message>
362 </Iteration>
363 <Iteration>
364 <Iteration_iter-num>19</Iteration_iter-num>
365 <Iteration_query-ID>Query_4</Iteration_query-ID>
366 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
367 <Iteration_query-len>348</Iteration_query-len>
368 <Iteration_hits>
369 <Hit>
370 <Hit_num>1</Hit_num>
371 <Hit_id>Subject_1</Hit_id>
372 <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def>
373 <Hit_accession>Subject_1</Hit_accession>
374 <Hit_len>1047</Hit_len>
375 <Hit_hsps>
376 <Hsp>
377 <Hsp_num>1</Hsp_num>
378 <Hsp_bit-score>732.392902459534</Hsp_bit-score>
379 <Hsp_score>1689</Hsp_score>
380 <Hsp_evalue>0</Hsp_evalue>
381 <Hsp_query-from>1</Hsp_query-from>
382 <Hsp_query-to>348</Hsp_query-to>
383 <Hsp_hit-from>1</Hsp_hit-from>
384 <Hsp_hit-to>1044</Hsp_hit-to>
385 <Hsp_query-frame>0</Hsp_query-frame>
386 <Hsp_hit-frame>1</Hsp_hit-frame>
387 <Hsp_identity>336</Hsp_identity>
388 <Hsp_positive>343</Hsp_positive>
389 <Hsp_gaps>0</Hsp_gaps>
390 <Hsp_align-len>348</Hsp_align-len>
391 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
392 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq>
393 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline>
394 </Hsp>
395 </Hit_hsps>
396 </Hit>
397 </Iteration_hits>
398 <Iteration_stat>
399 <Statistics>
400 <Statistics_db-num>0</Statistics_db-num>
401 <Statistics_db-len>0</Statistics_db-len>
402 <Statistics_hsp-len>18</Statistics_hsp-len>
403 <Statistics_eff-space>109230</Statistics_eff-space>
404 <Statistics_kappa>0.071</Statistics_kappa>
405 <Statistics_lambda>0.299</Statistics_lambda>
406 <Statistics_entropy>0.27</Statistics_entropy>
407 </Statistics>
408 </Iteration_stat>
409 </Iteration>
410 <Iteration>
411 <Iteration_iter-num>20</Iteration_iter-num>
412 <Iteration_query-ID>Query_4</Iteration_query-ID>
413 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
414 <Iteration_query-len>348</Iteration_query-len>
415 <Iteration_hits>
416 <Hit>
417 <Hit_num>1</Hit_num>
418 <Hit_id>Subject_2</Hit_id>
419 <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def>
420 <Hit_accession>Subject_2</Hit_accession>
421 <Hit_len>1574</Hit_len>
422 <Hit_hsps>
423 <Hsp>
424 <Hsp_num>1</Hsp_num>
425 <Hsp_bit-score>646.119739014374</Hsp_bit-score>
426 <Hsp_score>1489</Hsp_score>
427 <Hsp_evalue>0</Hsp_evalue>
428 <Hsp_query-from>1</Hsp_query-from>
429 <Hsp_query-to>341</Hsp_query-to>
430 <Hsp_hit-from>42</Hsp_hit-from>
431 <Hsp_hit-to>1067</Hsp_hit-to>
432 <Hsp_query-frame>0</Hsp_query-frame>
433 <Hsp_hit-frame>3</Hsp_hit-frame>
434 <Hsp_identity>290</Hsp_identity>
435 <Hsp_positive>320</Hsp_positive>
436 <Hsp_gaps>1</Hsp_gaps>
437 <Hsp_align-len>342</Hsp_align-len>
438 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq>
439 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq>
440 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline>
441 </Hsp>
442 </Hit_hsps>
443 </Hit>
444 </Iteration_hits>
445 <Iteration_stat>
446 <Statistics>
447 <Statistics_db-num>0</Statistics_db-num>
448 <Statistics_db-len>0</Statistics_db-len>
449 <Statistics_hsp-len>18</Statistics_hsp-len>
450 <Statistics_eff-space>109230</Statistics_eff-space>
451 <Statistics_kappa>0.071</Statistics_kappa>
452 <Statistics_lambda>0.299</Statistics_lambda>
453 <Statistics_entropy>0.27</Statistics_entropy>
454 </Statistics>
455 </Iteration_stat>
456 </Iteration>
457 <Iteration>
458 <Iteration_iter-num>21</Iteration_iter-num>
459 <Iteration_query-ID>Query_4</Iteration_query-ID>
460 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
461 <Iteration_query-len>348</Iteration_query-len>
462 <Iteration_hits>
463 <Hit>
464 <Hit_num>1</Hit_num>
465 <Hit_id>Subject_3</Hit_id>
466 <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def>
467 <Hit_accession>Subject_3</Hit_accession>
468 <Hit_len>4301</Hit_len>
469 <Hit_hsps>
470 <Hsp>
471 <Hsp_num>1</Hsp_num>
472 <Hsp_bit-score>151.343146656381</Hsp_bit-score>
473 <Hsp_score>342</Hsp_score>
474 <Hsp_evalue>1.39566684546685e-72</Hsp_evalue>
475 <Hsp_query-from>239</Hsp_query-from>
476 <Hsp_query-to>312</Hsp_query-to>
477 <Hsp_hit-from>3147</Hsp_hit-from>
478 <Hsp_hit-to>3368</Hsp_hit-to>
479 <Hsp_query-frame>0</Hsp_query-frame>
480 <Hsp_hit-frame>3</Hsp_hit-frame>
481 <Hsp_identity>69</Hsp_identity>
482 <Hsp_positive>73</Hsp_positive>
483 <Hsp_gaps>0</Hsp_gaps>
484 <Hsp_align-len>74</Hsp_align-len>
485 <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq>
486 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq>
487 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline>
488 </Hsp>
489 <Hsp>
490 <Hsp_num>2</Hsp_num>
491 <Hsp_bit-score>126.323929257285</Hsp_bit-score>
492 <Hsp_score>284</Hsp_score>
493 <Hsp_evalue>1.39566684546685e-72</Hsp_evalue>
494 <Hsp_query-from>177</Hsp_query-from>
495 <Hsp_query-to>235</Hsp_query-to>
496 <Hsp_hit-from>2855</Hsp_hit-from>
497 <Hsp_hit-to>3031</Hsp_hit-to>
498 <Hsp_query-frame>0</Hsp_query-frame>
499 <Hsp_hit-frame>2</Hsp_hit-frame>
500 <Hsp_identity>54</Hsp_identity>
501 <Hsp_positive>57</Hsp_positive>
502 <Hsp_gaps>0</Hsp_gaps>
503 <Hsp_align-len>59</Hsp_align-len>
504 <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq>
505 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq>
506 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline>
507 </Hsp>
508 <Hsp>
509 <Hsp_num>3</Hsp_num>
510 <Hsp_bit-score>229.420359574251</Hsp_bit-score>
511 <Hsp_score>523</Hsp_score>
512 <Hsp_evalue>9.84654801241353e-65</Hsp_evalue>
513 <Hsp_query-from>11</Hsp_query-from>
514 <Hsp_query-to>121</Hsp_query-to>
515 <Hsp_hit-from>1</Hsp_hit-from>
516 <Hsp_hit-to>333</Hsp_hit-to>
517 <Hsp_query-frame>0</Hsp_query-frame>
518 <Hsp_hit-frame>1</Hsp_hit-frame>
519 <Hsp_identity>107</Hsp_identity>
520 <Hsp_positive>109</Hsp_positive>
521 <Hsp_gaps>0</Hsp_gaps>
522 <Hsp_align-len>111</Hsp_align-len>
523 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq>
524 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq>
525 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline>
526 </Hsp>
527 <Hsp>
528 <Hsp_num>4</Hsp_num>
529 <Hsp_bit-score>122.873002719478</Hsp_bit-score>
530 <Hsp_score>276</Hsp_score>
531 <Hsp_evalue>1.40732096096596e-32</Hsp_evalue>
532 <Hsp_query-from>119</Hsp_query-from>
533 <Hsp_query-to>177</Hsp_query-to>
534 <Hsp_hit-from>1404</Hsp_hit-from>
535 <Hsp_hit-to>1580</Hsp_hit-to>
536 <Hsp_query-frame>0</Hsp_query-frame>
537 <Hsp_hit-frame>3</Hsp_hit-frame>
538 <Hsp_identity>55</Hsp_identity>
539 <Hsp_positive>56</Hsp_positive>
540 <Hsp_gaps>0</Hsp_gaps>
541 <Hsp_align-len>59</Hsp_align-len>
542 <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq>
543 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq>
544 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline>
545 </Hsp>
546 <Hsp>
547 <Hsp_num>5</Hsp_num>
548 <Hsp_bit-score>57.7367643183824</Hsp_bit-score>
549 <Hsp_score>125</Hsp_score>
550 <Hsp_evalue>5.60065526485586e-13</Hsp_evalue>
551 <Hsp_query-from>312</Hsp_query-from>
552 <Hsp_query-to>337</Hsp_query-to>
553 <Hsp_hit-from>4222</Hsp_hit-from>
554 <Hsp_hit-to>4299</Hsp_hit-to>
555 <Hsp_query-frame>0</Hsp_query-frame>
556 <Hsp_hit-frame>1</Hsp_hit-frame>
557 <Hsp_identity>23</Hsp_identity>
558 <Hsp_positive>24</Hsp_positive>
559 <Hsp_gaps>0</Hsp_gaps>
560 <Hsp_align-len>26</Hsp_align-len>
561 <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq>
562 <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq>
563 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline>
564 </Hsp>
565 </Hit_hsps>
566 </Hit>
567 </Iteration_hits>
568 <Iteration_stat>
569 <Statistics>
570 <Statistics_db-num>0</Statistics_db-num>
571 <Statistics_db-len>0</Statistics_db-len>
572 <Statistics_hsp-len>18</Statistics_hsp-len>
573 <Statistics_eff-space>109230</Statistics_eff-space>
574 <Statistics_kappa>0.071</Statistics_kappa>
575 <Statistics_lambda>0.299</Statistics_lambda>
576 <Statistics_entropy>0.27</Statistics_entropy>
577 </Statistics>
578 </Iteration_stat>
579 </Iteration>
580 <Iteration>
581 <Iteration_iter-num>22</Iteration_iter-num>
582 <Iteration_query-ID>Query_4</Iteration_query-ID>
583 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
584 <Iteration_query-len>348</Iteration_query-len>
585 <Iteration_hits>
586 <Hit>
587 <Hit_num>1</Hit_num>
588 <Hit_id>Subject_4</Hit_id>
589 <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def>
590 <Hit_accession>Subject_4</Hit_accession>
591 <Hit_len>983</Hit_len>
592 <Hit_hsps>
593 <Hsp>
594 <Hsp_num>1</Hsp_num>
595 <Hsp_bit-score>658.197981896696</Hsp_bit-score>
596 <Hsp_score>1517</Hsp_score>
597 <Hsp_evalue>0</Hsp_evalue>
598 <Hsp_query-from>11</Hsp_query-from>
599 <Hsp_query-to>336</Hsp_query-to>
600 <Hsp_hit-from>1</Hsp_hit-from>
601 <Hsp_hit-to>978</Hsp_hit-to>
602 <Hsp_query-frame>0</Hsp_query-frame>
603 <Hsp_hit-frame>1</Hsp_hit-frame>
604 <Hsp_identity>310</Hsp_identity>
605 <Hsp_positive>322</Hsp_positive>
606 <Hsp_gaps>0</Hsp_gaps>
607 <Hsp_align-len>326</Hsp_align-len>
608 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq>
609 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq>
610 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline>
611 </Hsp>
612 </Hit_hsps>
613 </Hit>
614 </Iteration_hits>
615 <Iteration_stat>
616 <Statistics>
617 <Statistics_db-num>0</Statistics_db-num>
618 <Statistics_db-len>0</Statistics_db-len>
619 <Statistics_hsp-len>18</Statistics_hsp-len>
620 <Statistics_eff-space>109230</Statistics_eff-space>
621 <Statistics_kappa>0.071</Statistics_kappa>
622 <Statistics_lambda>0.299</Statistics_lambda>
623 <Statistics_entropy>0.27</Statistics_entropy>
624 </Statistics>
625 </Iteration_stat>
626 </Iteration>
627 <Iteration>
628 <Iteration_iter-num>23</Iteration_iter-num>
629 <Iteration_query-ID>Query_4</Iteration_query-ID>
630 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
631 <Iteration_query-len>348</Iteration_query-len>
632 <Iteration_hits>
633 <Hit>
634 <Hit_num>1</Hit_num>
635 <Hit_id>Subject_5</Hit_id>
636 <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def>
637 <Hit_accession>Subject_5</Hit_accession>
638 <Hit_len>1047</Hit_len>
639 <Hit_hsps>
640 <Hsp>
641 <Hsp_num>1</Hsp_num>
642 <Hsp_bit-score>711.255977415469</Hsp_bit-score>
643 <Hsp_score>1640</Hsp_score>
644 <Hsp_evalue>0</Hsp_evalue>
645 <Hsp_query-from>1</Hsp_query-from>
646 <Hsp_query-to>348</Hsp_query-to>
647 <Hsp_hit-from>1</Hsp_hit-from>
648 <Hsp_hit-to>1044</Hsp_hit-to>
649 <Hsp_query-frame>0</Hsp_query-frame>
650 <Hsp_hit-frame>1</Hsp_hit-frame>
651 <Hsp_identity>325</Hsp_identity>
652 <Hsp_positive>337</Hsp_positive>
653 <Hsp_gaps>0</Hsp_gaps>
654 <Hsp_align-len>348</Hsp_align-len>
655 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq>
656 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq>
657 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline>
658 </Hsp>
659 </Hit_hsps>
660 </Hit>
661 </Iteration_hits>
662 <Iteration_stat>
663 <Statistics>
664 <Statistics_db-num>0</Statistics_db-num>
665 <Statistics_db-len>0</Statistics_db-len>
666 <Statistics_hsp-len>18</Statistics_hsp-len>
667 <Statistics_eff-space>109230</Statistics_eff-space>
668 <Statistics_kappa>0.071</Statistics_kappa>
669 <Statistics_lambda>0.299</Statistics_lambda>
670 <Statistics_entropy>0.27</Statistics_entropy>
671 </Statistics>
672 </Iteration_stat>
673 </Iteration>
674 <Iteration>
675 <Iteration_iter-num>24</Iteration_iter-num>
676 <Iteration_query-ID>Query_4</Iteration_query-ID>
677 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def>
678 <Iteration_query-len>348</Iteration_query-len>
679 <Iteration_hits>
680 <Hit>
681 <Hit_num>1</Hit_num>
682 <Hit_id>Subject_6</Hit_id>
683 <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def>
684 <Hit_accession>Subject_6</Hit_accession>
685 <Hit_len>1344</Hit_len>
686 <Hit_hsps>
687 <Hsp>
688 <Hsp_num>1</Hsp_num>
689 <Hsp_bit-score>626.708277239213</Hsp_bit-score>
690 <Hsp_score>1444</Hsp_score>
691 <Hsp_evalue>0</Hsp_evalue>
692 <Hsp_query-from>1</Hsp_query-from>
693 <Hsp_query-to>341</Hsp_query-to>
694 <Hsp_hit-from>23</Hsp_hit-from>
695 <Hsp_hit-to>1048</Hsp_hit-to>
696 <Hsp_query-frame>0</Hsp_query-frame>
697 <Hsp_hit-frame>2</Hsp_hit-frame>
698 <Hsp_identity>281</Hsp_identity>
699 <Hsp_positive>311</Hsp_positive>
700 <Hsp_gaps>1</Hsp_gaps>
701 <Hsp_align-len>342</Hsp_align-len>
702 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq>
703 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq>
704 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline>
705 </Hsp>
706 </Hit_hsps>
707 </Hit>
708 </Iteration_hits>
709 <Iteration_stat>
710 <Statistics>
711 <Statistics_db-num>0</Statistics_db-num>
712 <Statistics_db-len>0</Statistics_db-len>
713 <Statistics_hsp-len>18</Statistics_hsp-len>
714 <Statistics_eff-space>109230</Statistics_eff-space>
715 <Statistics_kappa>0.071</Statistics_kappa>
716 <Statistics_lambda>0.299</Statistics_lambda>
717 <Statistics_entropy>0.27</Statistics_entropy>
718 </Statistics>
719 </Iteration_stat>
720 </Iteration>
721 </BlastOutput_iterations>
722 </BlastOutput>