Mercurial > repos > devteam > ncbi_blast_plus
comparison test-data/tblastn_four_human_vs_rhodopsin.xml @ 0:d375502056f1 draft
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author | devteam |
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date | Fri, 17 Aug 2012 09:11:43 -0400 |
parents | |
children | 1f546099212f |
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1 <?xml version="1.0"?> | |
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd"> | |
3 <BlastOutput> | |
4 <BlastOutput_program>tblastn</BlastOutput_program> | |
5 <BlastOutput_version>TBLASTN 2.2.25+</BlastOutput_version> | |
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> | |
7 <BlastOutput_db></BlastOutput_db> | |
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | |
9 <BlastOutput_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</BlastOutput_query-def> | |
10 <BlastOutput_query-len>406</BlastOutput_query-len> | |
11 <BlastOutput_param> | |
12 <Parameters> | |
13 <Parameters_matrix>BLOSUM80</Parameters_matrix> | |
14 <Parameters_expect>1e-10</Parameters_expect> | |
15 <Parameters_gap-open>10</Parameters_gap-open> | |
16 <Parameters_gap-extend>1</Parameters_gap-extend> | |
17 <Parameters_filter>F</Parameters_filter> | |
18 </Parameters> | |
19 </BlastOutput_param> | |
20 <BlastOutput_iterations> | |
21 <Iteration> | |
22 <Iteration_iter-num>1</Iteration_iter-num> | |
23 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
24 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
25 <Iteration_query-len>406</Iteration_query-len> | |
26 <Iteration_hits></Iteration_hits> | |
27 <Iteration_stat> | |
28 <Statistics> | |
29 <Statistics_db-num>0</Statistics_db-num> | |
30 <Statistics_db-len>0</Statistics_db-len> | |
31 <Statistics_hsp-len>19</Statistics_hsp-len> | |
32 <Statistics_eff-space>127710</Statistics_eff-space> | |
33 <Statistics_kappa>0.071</Statistics_kappa> | |
34 <Statistics_lambda>0.299</Statistics_lambda> | |
35 <Statistics_entropy>0.27</Statistics_entropy> | |
36 </Statistics> | |
37 </Iteration_stat> | |
38 <Iteration_message>No hits found</Iteration_message> | |
39 </Iteration> | |
40 <Iteration> | |
41 <Iteration_iter-num>2</Iteration_iter-num> | |
42 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
43 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
44 <Iteration_query-len>406</Iteration_query-len> | |
45 <Iteration_hits></Iteration_hits> | |
46 <Iteration_stat> | |
47 <Statistics> | |
48 <Statistics_db-num>0</Statistics_db-num> | |
49 <Statistics_db-len>0</Statistics_db-len> | |
50 <Statistics_hsp-len>19</Statistics_hsp-len> | |
51 <Statistics_eff-space>127710</Statistics_eff-space> | |
52 <Statistics_kappa>0.071</Statistics_kappa> | |
53 <Statistics_lambda>0.299</Statistics_lambda> | |
54 <Statistics_entropy>0.27</Statistics_entropy> | |
55 </Statistics> | |
56 </Iteration_stat> | |
57 <Iteration_message>No hits found</Iteration_message> | |
58 </Iteration> | |
59 <Iteration> | |
60 <Iteration_iter-num>3</Iteration_iter-num> | |
61 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
62 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
63 <Iteration_query-len>406</Iteration_query-len> | |
64 <Iteration_hits></Iteration_hits> | |
65 <Iteration_stat> | |
66 <Statistics> | |
67 <Statistics_db-num>0</Statistics_db-num> | |
68 <Statistics_db-len>0</Statistics_db-len> | |
69 <Statistics_hsp-len>19</Statistics_hsp-len> | |
70 <Statistics_eff-space>127710</Statistics_eff-space> | |
71 <Statistics_kappa>0.071</Statistics_kappa> | |
72 <Statistics_lambda>0.299</Statistics_lambda> | |
73 <Statistics_entropy>0.27</Statistics_entropy> | |
74 </Statistics> | |
75 </Iteration_stat> | |
76 <Iteration_message>No hits found</Iteration_message> | |
77 </Iteration> | |
78 <Iteration> | |
79 <Iteration_iter-num>4</Iteration_iter-num> | |
80 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
81 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
82 <Iteration_query-len>406</Iteration_query-len> | |
83 <Iteration_hits></Iteration_hits> | |
84 <Iteration_stat> | |
85 <Statistics> | |
86 <Statistics_db-num>0</Statistics_db-num> | |
87 <Statistics_db-len>0</Statistics_db-len> | |
88 <Statistics_hsp-len>19</Statistics_hsp-len> | |
89 <Statistics_eff-space>127710</Statistics_eff-space> | |
90 <Statistics_kappa>0.071</Statistics_kappa> | |
91 <Statistics_lambda>0.299</Statistics_lambda> | |
92 <Statistics_entropy>0.27</Statistics_entropy> | |
93 </Statistics> | |
94 </Iteration_stat> | |
95 <Iteration_message>No hits found</Iteration_message> | |
96 </Iteration> | |
97 <Iteration> | |
98 <Iteration_iter-num>5</Iteration_iter-num> | |
99 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
100 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
101 <Iteration_query-len>406</Iteration_query-len> | |
102 <Iteration_hits></Iteration_hits> | |
103 <Iteration_stat> | |
104 <Statistics> | |
105 <Statistics_db-num>0</Statistics_db-num> | |
106 <Statistics_db-len>0</Statistics_db-len> | |
107 <Statistics_hsp-len>19</Statistics_hsp-len> | |
108 <Statistics_eff-space>127710</Statistics_eff-space> | |
109 <Statistics_kappa>0.071</Statistics_kappa> | |
110 <Statistics_lambda>0.299</Statistics_lambda> | |
111 <Statistics_entropy>0.27</Statistics_entropy> | |
112 </Statistics> | |
113 </Iteration_stat> | |
114 <Iteration_message>No hits found</Iteration_message> | |
115 </Iteration> | |
116 <Iteration> | |
117 <Iteration_iter-num>6</Iteration_iter-num> | |
118 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
119 <Iteration_query-def>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1</Iteration_query-def> | |
120 <Iteration_query-len>406</Iteration_query-len> | |
121 <Iteration_hits></Iteration_hits> | |
122 <Iteration_stat> | |
123 <Statistics> | |
124 <Statistics_db-num>0</Statistics_db-num> | |
125 <Statistics_db-len>0</Statistics_db-len> | |
126 <Statistics_hsp-len>19</Statistics_hsp-len> | |
127 <Statistics_eff-space>127710</Statistics_eff-space> | |
128 <Statistics_kappa>0.071</Statistics_kappa> | |
129 <Statistics_lambda>0.299</Statistics_lambda> | |
130 <Statistics_entropy>0.27</Statistics_entropy> | |
131 </Statistics> | |
132 </Iteration_stat> | |
133 <Iteration_message>No hits found</Iteration_message> | |
134 </Iteration> | |
135 <Iteration> | |
136 <Iteration_iter-num>7</Iteration_iter-num> | |
137 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
138 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
139 <Iteration_query-len>1161</Iteration_query-len> | |
140 <Iteration_hits></Iteration_hits> | |
141 <Iteration_stat> | |
142 <Statistics> | |
143 <Statistics_db-num>0</Statistics_db-num> | |
144 <Statistics_db-len>0</Statistics_db-len> | |
145 <Statistics_hsp-len>23</Statistics_hsp-len> | |
146 <Statistics_eff-space>370988</Statistics_eff-space> | |
147 <Statistics_kappa>0.071</Statistics_kappa> | |
148 <Statistics_lambda>0.299</Statistics_lambda> | |
149 <Statistics_entropy>0.27</Statistics_entropy> | |
150 </Statistics> | |
151 </Iteration_stat> | |
152 <Iteration_message>No hits found</Iteration_message> | |
153 </Iteration> | |
154 <Iteration> | |
155 <Iteration_iter-num>8</Iteration_iter-num> | |
156 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
157 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
158 <Iteration_query-len>1161</Iteration_query-len> | |
159 <Iteration_hits></Iteration_hits> | |
160 <Iteration_stat> | |
161 <Statistics> | |
162 <Statistics_db-num>0</Statistics_db-num> | |
163 <Statistics_db-len>0</Statistics_db-len> | |
164 <Statistics_hsp-len>23</Statistics_hsp-len> | |
165 <Statistics_eff-space>370988</Statistics_eff-space> | |
166 <Statistics_kappa>0.071</Statistics_kappa> | |
167 <Statistics_lambda>0.299</Statistics_lambda> | |
168 <Statistics_entropy>0.27</Statistics_entropy> | |
169 </Statistics> | |
170 </Iteration_stat> | |
171 <Iteration_message>No hits found</Iteration_message> | |
172 </Iteration> | |
173 <Iteration> | |
174 <Iteration_iter-num>9</Iteration_iter-num> | |
175 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
176 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
177 <Iteration_query-len>1161</Iteration_query-len> | |
178 <Iteration_hits></Iteration_hits> | |
179 <Iteration_stat> | |
180 <Statistics> | |
181 <Statistics_db-num>0</Statistics_db-num> | |
182 <Statistics_db-len>0</Statistics_db-len> | |
183 <Statistics_hsp-len>23</Statistics_hsp-len> | |
184 <Statistics_eff-space>370988</Statistics_eff-space> | |
185 <Statistics_kappa>0.071</Statistics_kappa> | |
186 <Statistics_lambda>0.299</Statistics_lambda> | |
187 <Statistics_entropy>0.27</Statistics_entropy> | |
188 </Statistics> | |
189 </Iteration_stat> | |
190 <Iteration_message>No hits found</Iteration_message> | |
191 </Iteration> | |
192 <Iteration> | |
193 <Iteration_iter-num>10</Iteration_iter-num> | |
194 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
195 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
196 <Iteration_query-len>1161</Iteration_query-len> | |
197 <Iteration_hits></Iteration_hits> | |
198 <Iteration_stat> | |
199 <Statistics> | |
200 <Statistics_db-num>0</Statistics_db-num> | |
201 <Statistics_db-len>0</Statistics_db-len> | |
202 <Statistics_hsp-len>23</Statistics_hsp-len> | |
203 <Statistics_eff-space>370988</Statistics_eff-space> | |
204 <Statistics_kappa>0.071</Statistics_kappa> | |
205 <Statistics_lambda>0.299</Statistics_lambda> | |
206 <Statistics_entropy>0.27</Statistics_entropy> | |
207 </Statistics> | |
208 </Iteration_stat> | |
209 <Iteration_message>No hits found</Iteration_message> | |
210 </Iteration> | |
211 <Iteration> | |
212 <Iteration_iter-num>11</Iteration_iter-num> | |
213 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
214 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
215 <Iteration_query-len>1161</Iteration_query-len> | |
216 <Iteration_hits></Iteration_hits> | |
217 <Iteration_stat> | |
218 <Statistics> | |
219 <Statistics_db-num>0</Statistics_db-num> | |
220 <Statistics_db-len>0</Statistics_db-len> | |
221 <Statistics_hsp-len>23</Statistics_hsp-len> | |
222 <Statistics_eff-space>370988</Statistics_eff-space> | |
223 <Statistics_kappa>0.071</Statistics_kappa> | |
224 <Statistics_lambda>0.299</Statistics_lambda> | |
225 <Statistics_entropy>0.27</Statistics_entropy> | |
226 </Statistics> | |
227 </Iteration_stat> | |
228 <Iteration_message>No hits found</Iteration_message> | |
229 </Iteration> | |
230 <Iteration> | |
231 <Iteration_iter-num>12</Iteration_iter-num> | |
232 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
233 <Iteration_query-def>sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2</Iteration_query-def> | |
234 <Iteration_query-len>1161</Iteration_query-len> | |
235 <Iteration_hits></Iteration_hits> | |
236 <Iteration_stat> | |
237 <Statistics> | |
238 <Statistics_db-num>0</Statistics_db-num> | |
239 <Statistics_db-len>0</Statistics_db-len> | |
240 <Statistics_hsp-len>23</Statistics_hsp-len> | |
241 <Statistics_eff-space>370988</Statistics_eff-space> | |
242 <Statistics_kappa>0.071</Statistics_kappa> | |
243 <Statistics_lambda>0.299</Statistics_lambda> | |
244 <Statistics_entropy>0.27</Statistics_entropy> | |
245 </Statistics> | |
246 </Iteration_stat> | |
247 <Iteration_message>No hits found</Iteration_message> | |
248 </Iteration> | |
249 <Iteration> | |
250 <Iteration_iter-num>13</Iteration_iter-num> | |
251 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
252 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
253 <Iteration_query-len>1382</Iteration_query-len> | |
254 <Iteration_hits></Iteration_hits> | |
255 <Iteration_stat> | |
256 <Statistics> | |
257 <Statistics_db-num>0</Statistics_db-num> | |
258 <Statistics_db-len>0</Statistics_db-len> | |
259 <Statistics_hsp-len>24</Statistics_hsp-len> | |
260 <Statistics_eff-space>441350</Statistics_eff-space> | |
261 <Statistics_kappa>0.071</Statistics_kappa> | |
262 <Statistics_lambda>0.299</Statistics_lambda> | |
263 <Statistics_entropy>0.27</Statistics_entropy> | |
264 </Statistics> | |
265 </Iteration_stat> | |
266 <Iteration_message>No hits found</Iteration_message> | |
267 </Iteration> | |
268 <Iteration> | |
269 <Iteration_iter-num>14</Iteration_iter-num> | |
270 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
271 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
272 <Iteration_query-len>1382</Iteration_query-len> | |
273 <Iteration_hits></Iteration_hits> | |
274 <Iteration_stat> | |
275 <Statistics> | |
276 <Statistics_db-num>0</Statistics_db-num> | |
277 <Statistics_db-len>0</Statistics_db-len> | |
278 <Statistics_hsp-len>24</Statistics_hsp-len> | |
279 <Statistics_eff-space>441350</Statistics_eff-space> | |
280 <Statistics_kappa>0.071</Statistics_kappa> | |
281 <Statistics_lambda>0.299</Statistics_lambda> | |
282 <Statistics_entropy>0.27</Statistics_entropy> | |
283 </Statistics> | |
284 </Iteration_stat> | |
285 <Iteration_message>No hits found</Iteration_message> | |
286 </Iteration> | |
287 <Iteration> | |
288 <Iteration_iter-num>15</Iteration_iter-num> | |
289 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
290 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
291 <Iteration_query-len>1382</Iteration_query-len> | |
292 <Iteration_hits></Iteration_hits> | |
293 <Iteration_stat> | |
294 <Statistics> | |
295 <Statistics_db-num>0</Statistics_db-num> | |
296 <Statistics_db-len>0</Statistics_db-len> | |
297 <Statistics_hsp-len>24</Statistics_hsp-len> | |
298 <Statistics_eff-space>441350</Statistics_eff-space> | |
299 <Statistics_kappa>0.071</Statistics_kappa> | |
300 <Statistics_lambda>0.299</Statistics_lambda> | |
301 <Statistics_entropy>0.27</Statistics_entropy> | |
302 </Statistics> | |
303 </Iteration_stat> | |
304 <Iteration_message>No hits found</Iteration_message> | |
305 </Iteration> | |
306 <Iteration> | |
307 <Iteration_iter-num>16</Iteration_iter-num> | |
308 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
309 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
310 <Iteration_query-len>1382</Iteration_query-len> | |
311 <Iteration_hits></Iteration_hits> | |
312 <Iteration_stat> | |
313 <Statistics> | |
314 <Statistics_db-num>0</Statistics_db-num> | |
315 <Statistics_db-len>0</Statistics_db-len> | |
316 <Statistics_hsp-len>24</Statistics_hsp-len> | |
317 <Statistics_eff-space>441350</Statistics_eff-space> | |
318 <Statistics_kappa>0.071</Statistics_kappa> | |
319 <Statistics_lambda>0.299</Statistics_lambda> | |
320 <Statistics_entropy>0.27</Statistics_entropy> | |
321 </Statistics> | |
322 </Iteration_stat> | |
323 <Iteration_message>No hits found</Iteration_message> | |
324 </Iteration> | |
325 <Iteration> | |
326 <Iteration_iter-num>17</Iteration_iter-num> | |
327 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
328 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
329 <Iteration_query-len>1382</Iteration_query-len> | |
330 <Iteration_hits></Iteration_hits> | |
331 <Iteration_stat> | |
332 <Statistics> | |
333 <Statistics_db-num>0</Statistics_db-num> | |
334 <Statistics_db-len>0</Statistics_db-len> | |
335 <Statistics_hsp-len>24</Statistics_hsp-len> | |
336 <Statistics_eff-space>441350</Statistics_eff-space> | |
337 <Statistics_kappa>0.071</Statistics_kappa> | |
338 <Statistics_lambda>0.299</Statistics_lambda> | |
339 <Statistics_entropy>0.27</Statistics_entropy> | |
340 </Statistics> | |
341 </Iteration_stat> | |
342 <Iteration_message>No hits found</Iteration_message> | |
343 </Iteration> | |
344 <Iteration> | |
345 <Iteration_iter-num>18</Iteration_iter-num> | |
346 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
347 <Iteration_query-def>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4</Iteration_query-def> | |
348 <Iteration_query-len>1382</Iteration_query-len> | |
349 <Iteration_hits></Iteration_hits> | |
350 <Iteration_stat> | |
351 <Statistics> | |
352 <Statistics_db-num>0</Statistics_db-num> | |
353 <Statistics_db-len>0</Statistics_db-len> | |
354 <Statistics_hsp-len>24</Statistics_hsp-len> | |
355 <Statistics_eff-space>441350</Statistics_eff-space> | |
356 <Statistics_kappa>0.071</Statistics_kappa> | |
357 <Statistics_lambda>0.299</Statistics_lambda> | |
358 <Statistics_entropy>0.27</Statistics_entropy> | |
359 </Statistics> | |
360 </Iteration_stat> | |
361 <Iteration_message>No hits found</Iteration_message> | |
362 </Iteration> | |
363 <Iteration> | |
364 <Iteration_iter-num>19</Iteration_iter-num> | |
365 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
366 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
367 <Iteration_query-len>348</Iteration_query-len> | |
368 <Iteration_hits> | |
369 <Hit> | |
370 <Hit_num>1</Hit_num> | |
371 <Hit_id>Subject_1</Hit_id> | |
372 <Hit_def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Hit_def> | |
373 <Hit_accession>Subject_1</Hit_accession> | |
374 <Hit_len>1047</Hit_len> | |
375 <Hit_hsps> | |
376 <Hsp> | |
377 <Hsp_num>1</Hsp_num> | |
378 <Hsp_bit-score>732.392902459534</Hsp_bit-score> | |
379 <Hsp_score>1689</Hsp_score> | |
380 <Hsp_evalue>0</Hsp_evalue> | |
381 <Hsp_query-from>1</Hsp_query-from> | |
382 <Hsp_query-to>348</Hsp_query-to> | |
383 <Hsp_hit-from>1</Hsp_hit-from> | |
384 <Hsp_hit-to>1044</Hsp_hit-to> | |
385 <Hsp_query-frame>0</Hsp_query-frame> | |
386 <Hsp_hit-frame>1</Hsp_hit-frame> | |
387 <Hsp_identity>336</Hsp_identity> | |
388 <Hsp_positive>343</Hsp_positive> | |
389 <Hsp_gaps>0</Hsp_gaps> | |
390 <Hsp_align-len>348</Hsp_align-len> | |
391 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> | |
392 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_hseq> | |
393 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> | |
394 </Hsp> | |
395 </Hit_hsps> | |
396 </Hit> | |
397 </Iteration_hits> | |
398 <Iteration_stat> | |
399 <Statistics> | |
400 <Statistics_db-num>0</Statistics_db-num> | |
401 <Statistics_db-len>0</Statistics_db-len> | |
402 <Statistics_hsp-len>18</Statistics_hsp-len> | |
403 <Statistics_eff-space>109230</Statistics_eff-space> | |
404 <Statistics_kappa>0.071</Statistics_kappa> | |
405 <Statistics_lambda>0.299</Statistics_lambda> | |
406 <Statistics_entropy>0.27</Statistics_entropy> | |
407 </Statistics> | |
408 </Iteration_stat> | |
409 </Iteration> | |
410 <Iteration> | |
411 <Iteration_iter-num>20</Iteration_iter-num> | |
412 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
413 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
414 <Iteration_query-len>348</Iteration_query-len> | |
415 <Iteration_hits> | |
416 <Hit> | |
417 <Hit_num>1</Hit_num> | |
418 <Hit_id>Subject_2</Hit_id> | |
419 <Hit_def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Hit_def> | |
420 <Hit_accession>Subject_2</Hit_accession> | |
421 <Hit_len>1574</Hit_len> | |
422 <Hit_hsps> | |
423 <Hsp> | |
424 <Hsp_num>1</Hsp_num> | |
425 <Hsp_bit-score>646.119739014374</Hsp_bit-score> | |
426 <Hsp_score>1489</Hsp_score> | |
427 <Hsp_evalue>0</Hsp_evalue> | |
428 <Hsp_query-from>1</Hsp_query-from> | |
429 <Hsp_query-to>341</Hsp_query-to> | |
430 <Hsp_hit-from>42</Hsp_hit-from> | |
431 <Hsp_hit-to>1067</Hsp_hit-to> | |
432 <Hsp_query-frame>0</Hsp_query-frame> | |
433 <Hsp_hit-frame>3</Hsp_hit-frame> | |
434 <Hsp_identity>290</Hsp_identity> | |
435 <Hsp_positive>320</Hsp_positive> | |
436 <Hsp_gaps>1</Hsp_gaps> | |
437 <Hsp_align-len>342</Hsp_align-len> | |
438 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE</Hsp_qseq> | |
439 <Hsp_hseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE</Hsp_hseq> | |
440 <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE</Hsp_midline> | |
441 </Hsp> | |
442 </Hit_hsps> | |
443 </Hit> | |
444 </Iteration_hits> | |
445 <Iteration_stat> | |
446 <Statistics> | |
447 <Statistics_db-num>0</Statistics_db-num> | |
448 <Statistics_db-len>0</Statistics_db-len> | |
449 <Statistics_hsp-len>18</Statistics_hsp-len> | |
450 <Statistics_eff-space>109230</Statistics_eff-space> | |
451 <Statistics_kappa>0.071</Statistics_kappa> | |
452 <Statistics_lambda>0.299</Statistics_lambda> | |
453 <Statistics_entropy>0.27</Statistics_entropy> | |
454 </Statistics> | |
455 </Iteration_stat> | |
456 </Iteration> | |
457 <Iteration> | |
458 <Iteration_iter-num>21</Iteration_iter-num> | |
459 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
460 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
461 <Iteration_query-len>348</Iteration_query-len> | |
462 <Iteration_hits> | |
463 <Hit> | |
464 <Hit_num>1</Hit_num> | |
465 <Hit_id>Subject_3</Hit_id> | |
466 <Hit_def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Hit_def> | |
467 <Hit_accession>Subject_3</Hit_accession> | |
468 <Hit_len>4301</Hit_len> | |
469 <Hit_hsps> | |
470 <Hsp> | |
471 <Hsp_num>1</Hsp_num> | |
472 <Hsp_bit-score>151.343146656381</Hsp_bit-score> | |
473 <Hsp_score>342</Hsp_score> | |
474 <Hsp_evalue>1.39566684546685e-72</Hsp_evalue> | |
475 <Hsp_query-from>239</Hsp_query-from> | |
476 <Hsp_query-to>312</Hsp_query-to> | |
477 <Hsp_hit-from>3147</Hsp_hit-from> | |
478 <Hsp_hit-to>3368</Hsp_hit-to> | |
479 <Hsp_query-frame>0</Hsp_query-frame> | |
480 <Hsp_hit-frame>3</Hsp_hit-frame> | |
481 <Hsp_identity>69</Hsp_identity> | |
482 <Hsp_positive>73</Hsp_positive> | |
483 <Hsp_gaps>0</Hsp_gaps> | |
484 <Hsp_align-len>74</Hsp_align-len> | |
485 <Hsp_qseq>ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_qseq> | |
486 <Hsp_hseq>ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_hseq> | |
487 <Hsp_midline>ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> | |
488 </Hsp> | |
489 <Hsp> | |
490 <Hsp_num>2</Hsp_num> | |
491 <Hsp_bit-score>126.323929257285</Hsp_bit-score> | |
492 <Hsp_score>284</Hsp_score> | |
493 <Hsp_evalue>1.39566684546685e-72</Hsp_evalue> | |
494 <Hsp_query-from>177</Hsp_query-from> | |
495 <Hsp_query-to>235</Hsp_query-to> | |
496 <Hsp_hit-from>2855</Hsp_hit-from> | |
497 <Hsp_hit-to>3031</Hsp_hit-to> | |
498 <Hsp_query-frame>0</Hsp_query-frame> | |
499 <Hsp_hit-frame>2</Hsp_hit-frame> | |
500 <Hsp_identity>54</Hsp_identity> | |
501 <Hsp_positive>57</Hsp_positive> | |
502 <Hsp_gaps>0</Hsp_gaps> | |
503 <Hsp_align-len>59</Hsp_align-len> | |
504 <Hsp_qseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_qseq> | |
505 <Hsp_hseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_hseq> | |
506 <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> | |
507 </Hsp> | |
508 <Hsp> | |
509 <Hsp_num>3</Hsp_num> | |
510 <Hsp_bit-score>229.420359574251</Hsp_bit-score> | |
511 <Hsp_score>523</Hsp_score> | |
512 <Hsp_evalue>9.84654801241353e-65</Hsp_evalue> | |
513 <Hsp_query-from>11</Hsp_query-from> | |
514 <Hsp_query-to>121</Hsp_query-to> | |
515 <Hsp_hit-from>1</Hsp_hit-from> | |
516 <Hsp_hit-to>333</Hsp_hit-to> | |
517 <Hsp_query-frame>0</Hsp_query-frame> | |
518 <Hsp_hit-frame>1</Hsp_hit-frame> | |
519 <Hsp_identity>107</Hsp_identity> | |
520 <Hsp_positive>109</Hsp_positive> | |
521 <Hsp_gaps>0</Hsp_gaps> | |
522 <Hsp_align-len>111</Hsp_align-len> | |
523 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> | |
524 <Hsp_hseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> | |
525 <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> | |
526 </Hsp> | |
527 <Hsp> | |
528 <Hsp_num>4</Hsp_num> | |
529 <Hsp_bit-score>122.873002719478</Hsp_bit-score> | |
530 <Hsp_score>276</Hsp_score> | |
531 <Hsp_evalue>1.40732096096596e-32</Hsp_evalue> | |
532 <Hsp_query-from>119</Hsp_query-from> | |
533 <Hsp_query-to>177</Hsp_query-to> | |
534 <Hsp_hit-from>1404</Hsp_hit-from> | |
535 <Hsp_hit-to>1580</Hsp_hit-to> | |
536 <Hsp_query-frame>0</Hsp_query-frame> | |
537 <Hsp_hit-frame>3</Hsp_hit-frame> | |
538 <Hsp_identity>55</Hsp_identity> | |
539 <Hsp_positive>56</Hsp_positive> | |
540 <Hsp_gaps>0</Hsp_gaps> | |
541 <Hsp_align-len>59</Hsp_align-len> | |
542 <Hsp_qseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_qseq> | |
543 <Hsp_hseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_hseq> | |
544 <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> | |
545 </Hsp> | |
546 <Hsp> | |
547 <Hsp_num>5</Hsp_num> | |
548 <Hsp_bit-score>57.7367643183824</Hsp_bit-score> | |
549 <Hsp_score>125</Hsp_score> | |
550 <Hsp_evalue>5.60065526485586e-13</Hsp_evalue> | |
551 <Hsp_query-from>312</Hsp_query-from> | |
552 <Hsp_query-to>337</Hsp_query-to> | |
553 <Hsp_hit-from>4222</Hsp_hit-from> | |
554 <Hsp_hit-to>4299</Hsp_hit-to> | |
555 <Hsp_query-frame>0</Hsp_query-frame> | |
556 <Hsp_hit-frame>1</Hsp_hit-frame> | |
557 <Hsp_identity>23</Hsp_identity> | |
558 <Hsp_positive>24</Hsp_positive> | |
559 <Hsp_gaps>0</Hsp_gaps> | |
560 <Hsp_align-len>26</Hsp_align-len> | |
561 <Hsp_qseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_qseq> | |
562 <Hsp_hseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_hseq> | |
563 <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> | |
564 </Hsp> | |
565 </Hit_hsps> | |
566 </Hit> | |
567 </Iteration_hits> | |
568 <Iteration_stat> | |
569 <Statistics> | |
570 <Statistics_db-num>0</Statistics_db-num> | |
571 <Statistics_db-len>0</Statistics_db-len> | |
572 <Statistics_hsp-len>18</Statistics_hsp-len> | |
573 <Statistics_eff-space>109230</Statistics_eff-space> | |
574 <Statistics_kappa>0.071</Statistics_kappa> | |
575 <Statistics_lambda>0.299</Statistics_lambda> | |
576 <Statistics_entropy>0.27</Statistics_entropy> | |
577 </Statistics> | |
578 </Iteration_stat> | |
579 </Iteration> | |
580 <Iteration> | |
581 <Iteration_iter-num>22</Iteration_iter-num> | |
582 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
583 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
584 <Iteration_query-len>348</Iteration_query-len> | |
585 <Iteration_hits> | |
586 <Hit> | |
587 <Hit_num>1</Hit_num> | |
588 <Hit_id>Subject_4</Hit_id> | |
589 <Hit_def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Hit_def> | |
590 <Hit_accession>Subject_4</Hit_accession> | |
591 <Hit_len>983</Hit_len> | |
592 <Hit_hsps> | |
593 <Hsp> | |
594 <Hsp_num>1</Hsp_num> | |
595 <Hsp_bit-score>658.197981896696</Hsp_bit-score> | |
596 <Hsp_score>1517</Hsp_score> | |
597 <Hsp_evalue>0</Hsp_evalue> | |
598 <Hsp_query-from>11</Hsp_query-from> | |
599 <Hsp_query-to>336</Hsp_query-to> | |
600 <Hsp_hit-from>1</Hsp_hit-from> | |
601 <Hsp_hit-to>978</Hsp_hit-to> | |
602 <Hsp_query-frame>0</Hsp_query-frame> | |
603 <Hsp_hit-frame>1</Hsp_hit-frame> | |
604 <Hsp_identity>310</Hsp_identity> | |
605 <Hsp_positive>322</Hsp_positive> | |
606 <Hsp_gaps>0</Hsp_gaps> | |
607 <Hsp_align-len>326</Hsp_align-len> | |
608 <Hsp_qseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_qseq> | |
609 <Hsp_hseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_hseq> | |
610 <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> | |
611 </Hsp> | |
612 </Hit_hsps> | |
613 </Hit> | |
614 </Iteration_hits> | |
615 <Iteration_stat> | |
616 <Statistics> | |
617 <Statistics_db-num>0</Statistics_db-num> | |
618 <Statistics_db-len>0</Statistics_db-len> | |
619 <Statistics_hsp-len>18</Statistics_hsp-len> | |
620 <Statistics_eff-space>109230</Statistics_eff-space> | |
621 <Statistics_kappa>0.071</Statistics_kappa> | |
622 <Statistics_lambda>0.299</Statistics_lambda> | |
623 <Statistics_entropy>0.27</Statistics_entropy> | |
624 </Statistics> | |
625 </Iteration_stat> | |
626 </Iteration> | |
627 <Iteration> | |
628 <Iteration_iter-num>23</Iteration_iter-num> | |
629 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
630 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
631 <Iteration_query-len>348</Iteration_query-len> | |
632 <Iteration_hits> | |
633 <Hit> | |
634 <Hit_num>1</Hit_num> | |
635 <Hit_id>Subject_5</Hit_id> | |
636 <Hit_def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Hit_def> | |
637 <Hit_accession>Subject_5</Hit_accession> | |
638 <Hit_len>1047</Hit_len> | |
639 <Hit_hsps> | |
640 <Hsp> | |
641 <Hsp_num>1</Hsp_num> | |
642 <Hsp_bit-score>711.255977415469</Hsp_bit-score> | |
643 <Hsp_score>1640</Hsp_score> | |
644 <Hsp_evalue>0</Hsp_evalue> | |
645 <Hsp_query-from>1</Hsp_query-from> | |
646 <Hsp_query-to>348</Hsp_query-to> | |
647 <Hsp_hit-from>1</Hsp_hit-from> | |
648 <Hsp_hit-to>1044</Hsp_hit-to> | |
649 <Hsp_query-frame>0</Hsp_query-frame> | |
650 <Hsp_hit-frame>1</Hsp_hit-frame> | |
651 <Hsp_identity>325</Hsp_identity> | |
652 <Hsp_positive>337</Hsp_positive> | |
653 <Hsp_gaps>0</Hsp_gaps> | |
654 <Hsp_align-len>348</Hsp_align-len> | |
655 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_qseq> | |
656 <Hsp_hseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_hseq> | |
657 <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> | |
658 </Hsp> | |
659 </Hit_hsps> | |
660 </Hit> | |
661 </Iteration_hits> | |
662 <Iteration_stat> | |
663 <Statistics> | |
664 <Statistics_db-num>0</Statistics_db-num> | |
665 <Statistics_db-len>0</Statistics_db-len> | |
666 <Statistics_hsp-len>18</Statistics_hsp-len> | |
667 <Statistics_eff-space>109230</Statistics_eff-space> | |
668 <Statistics_kappa>0.071</Statistics_kappa> | |
669 <Statistics_lambda>0.299</Statistics_lambda> | |
670 <Statistics_entropy>0.27</Statistics_entropy> | |
671 </Statistics> | |
672 </Iteration_stat> | |
673 </Iteration> | |
674 <Iteration> | |
675 <Iteration_iter-num>24</Iteration_iter-num> | |
676 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
677 <Iteration_query-def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Iteration_query-def> | |
678 <Iteration_query-len>348</Iteration_query-len> | |
679 <Iteration_hits> | |
680 <Hit> | |
681 <Hit_num>1</Hit_num> | |
682 <Hit_id>Subject_6</Hit_id> | |
683 <Hit_def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Hit_def> | |
684 <Hit_accession>Subject_6</Hit_accession> | |
685 <Hit_len>1344</Hit_len> | |
686 <Hit_hsps> | |
687 <Hsp> | |
688 <Hsp_num>1</Hsp_num> | |
689 <Hsp_bit-score>626.708277239213</Hsp_bit-score> | |
690 <Hsp_score>1444</Hsp_score> | |
691 <Hsp_evalue>0</Hsp_evalue> | |
692 <Hsp_query-from>1</Hsp_query-from> | |
693 <Hsp_query-to>341</Hsp_query-to> | |
694 <Hsp_hit-from>23</Hsp_hit-from> | |
695 <Hsp_hit-to>1048</Hsp_hit-to> | |
696 <Hsp_query-frame>0</Hsp_query-frame> | |
697 <Hsp_hit-frame>2</Hsp_hit-frame> | |
698 <Hsp_identity>281</Hsp_identity> | |
699 <Hsp_positive>311</Hsp_positive> | |
700 <Hsp_gaps>1</Hsp_gaps> | |
701 <Hsp_align-len>342</Hsp_align-len> | |
702 <Hsp_qseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE</Hsp_qseq> | |
703 <Hsp_hseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE</Hsp_hseq> | |
704 <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE</Hsp_midline> | |
705 </Hsp> | |
706 </Hit_hsps> | |
707 </Hit> | |
708 </Iteration_hits> | |
709 <Iteration_stat> | |
710 <Statistics> | |
711 <Statistics_db-num>0</Statistics_db-num> | |
712 <Statistics_db-len>0</Statistics_db-len> | |
713 <Statistics_hsp-len>18</Statistics_hsp-len> | |
714 <Statistics_eff-space>109230</Statistics_eff-space> | |
715 <Statistics_kappa>0.071</Statistics_kappa> | |
716 <Statistics_lambda>0.299</Statistics_lambda> | |
717 <Statistics_entropy>0.27</Statistics_entropy> | |
718 </Statistics> | |
719 </Iteration_stat> | |
720 </Iteration> | |
721 </BlastOutput_iterations> | |
722 </BlastOutput> |