diff tools/ncbi_blast_plus/ncbi_blastp_wrapper.xml @ 8:1f546099212f draft

Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns.

--- a/tools/ncbi_blast_plus/ncbi_blastp_wrapper.xml	Fri Feb 08 05:51:26 2013 -0500
+++ b/tools/ncbi_blast_plus/ncbi_blastp_wrapper.xml	Tue Feb 19 12:49:43 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="ncbi_blastp_wrapper" name="NCBI BLAST+ blastp" version="0.0.15">
+<tool id="ncbi_blastp_wrapper" name="NCBI BLAST+ blastp" version="0.0.17">
     <description>Search protein database with protein query sequence(s)</description>
     <!-- If job splitting is enabled, break up the query file into parts -->
     <parallelism method="multi" split_inputs="query" split_mode="to_size" split_size="1000" shared_inputs="subject,histdb" merge_outputs="output1"></parallelism>
@@ -86,8 +86,8 @@
         </param>
         <param name="evalue_cutoff" type="float" size="15" value="0.001" label="Set expectation value cutoff" />
         <param name="out_format" type="select" label="Output format">
-            <option value="6" selected="True">Tabular (standard 12 columns)</option>
-            <option value="ext">Tabular (extended 24 columns)</option>
+            <option value="6">Tabular (standard 12 columns)</option>
+            <option value="ext" selected="True">Tabular (extended 24 columns)</option>
             <option value="5">BLAST XML</option>
             <option value="0">Pairwise text</option>
             <option value="0 -html">Pairwise HTML</option>
@@ -265,7 +265,7 @@
 included by selecting the extended tabular output. The extra columns are
 included *after* the standard 12 columns. This is so that you can write
 workflow filtering steps that accept either the 12 or 24 column tabular
-BLAST output.
+BLAST output. Galaxy now uses this extended 24 column output by default.
 
 ====== ============= ===========================================
 Column NCBI name     Description