Mercurial > repos > devteam > ncbi_blast_plus
diff tools/ncbi_blast_plus/ncbi_blastx_wrapper.xml @ 14:2fe07f50a41e draft
Uploaded v0.1.01 - Requires blastdbd datatype (blast_datatypes v0.0.19). Support for makeprofiledb to create protein domain databases and use them in RPS-BLAST and RPS-TBLASTN. Tools now support GI and SeqID filters, and embed the citations.
author | peterjc |
---|---|
date | Mon, 01 Dec 2014 05:59:16 -0500 |
parents | 623f727cdff1 |
children | c16c30e9ad5b |
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--- a/tools/ncbi_blast_plus/ncbi_blastx_wrapper.xml Fri Mar 14 07:40:46 2014 -0400 +++ b/tools/ncbi_blast_plus/ncbi_blastx_wrapper.xml Mon Dec 01 05:59:16 2014 -0500 @@ -1,4 +1,4 @@ -<tool id="ncbi_blastx_wrapper" name="NCBI BLAST+ blastx" version="0.1.00"> +<tool id="ncbi_blastx_wrapper" name="NCBI BLAST+ blastx" version="0.1.01"> <description>Search protein database with translated nucleotide query sequence(s)</description> <!-- If job splitting is enabled, break up the query file into parts --> <parallelism method="multi" split_inputs="query" split_mode="to_size" split_size="1000" merge_outputs="output1"></parallelism> @@ -22,6 +22,7 @@ -matrix $adv_opts.matrix @ADVANCED_OPTIONS@ $adv_opts.ungapped +@ADV_ID_LIST_FILTER@ ## End of advanced options: #end if </command> @@ -45,6 +46,7 @@ <expand macro="input_word_size" /> <param name="ungapped" type="boolean" label="Perform ungapped alignment only?" truevalue="-ungapped" falsevalue="" checked="false" /> <expand macro="input_parse_deflines" /> + <expand macro="advanced_optional_id_files" /> </expand> </inputs> <outputs> @@ -123,4 +125,5 @@ @REFERENCES@ </help> + <expand macro="blast_citations" /> </tool>