Mercurial > repos > devteam > ncbi_blast_plus
diff test-data/blastx_rhodopsin_vs_four_human.xml @ 11:4c4a0da938ff draft
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25.
Supports $GALAXY_SLOTS.
Includes more tests and heavy use of macros.
| author | peterjc |
|---|---|
| date | Thu, 05 Dec 2013 06:55:59 -0500 |
| parents | 1f546099212f |
| children | 623f727cdff1 |
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--- a/test-data/blastx_rhodopsin_vs_four_human.xml Mon Sep 23 06:14:13 2013 -0400 +++ b/test-data/blastx_rhodopsin_vs_four_human.xml Thu Dec 05 06:55:59 2013 -0500 @@ -2,7 +2,7 @@ <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>blastx</BlastOutput_program> - <BlastOutput_version>BLASTX 2.2.26+</BlastOutput_version> + <BlastOutput_version>BLASTX 2.2.28+</BlastOutput_version> <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> <BlastOutput_db></BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> @@ -17,706 +17,725 @@ <Parameters_filter>L;</Parameters_filter> </Parameters> </BlastOutput_param> - <BlastOutput_iterations> - <Iteration> - <Iteration_iter-num>1</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>102080</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>2</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>102080</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>3</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>102080</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>4</Iteration_iter-num> - <Iteration_query-ID>Query_1</Iteration_query-ID> - <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>662.144</Hsp_bit-score> - <Hsp_score>1707</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>1044</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>348</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>336</Hsp_identity> - <Hsp_positive>343</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>348</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>102080</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>5</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> - <Iteration_query-len>1574</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>32</Statistics_hsp-len> - <Statistics_eff-space>155472</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>6</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> - <Iteration_query-len>1574</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>32</Statistics_hsp-len> - <Statistics_eff-space>155472</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>7</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> - <Iteration_query-len>1574</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>32</Statistics_hsp-len> - <Statistics_eff-space>155472</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>8</Iteration_iter-num> - <Iteration_query-ID>Query_2</Iteration_query-ID> - <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> - <Iteration_query-len>1574</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>575.089</Hsp_bit-score> - <Hsp_score>1481</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>42</Hsp_query-from> - <Hsp_query-to>1037</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>332</Hsp_hit-to> - <Hsp_query-frame>3</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>283</Hsp_identity> - <Hsp_positive>315</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>332</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> - <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>32</Statistics_hsp-len> - <Statistics_eff-space>155472</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>9</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> - <Iteration_query-len>4301</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>430746</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>10</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> - <Iteration_query-len>4301</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>430746</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>11</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> - <Iteration_query-len>4301</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>430746</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>12</Iteration_iter-num> - <Iteration_query-ID>Query_3</Iteration_query-ID> - <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> - <Iteration_query-len>4301</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>224.172</Hsp_bit-score> - <Hsp_score>570</Hsp_score> - <Hsp_evalue>1.84906e-68</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>333</Hsp_query-to> - <Hsp_hit-from>11</Hsp_hit-from> - <Hsp_hit-to>121</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>107</Hsp_identity> - <Hsp_positive>109</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>111</Hsp_align-len> - <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> - <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> - <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>2</Hsp_num> - <Hsp_bit-score>129.413</Hsp_bit-score> - <Hsp_score>324</Hsp_score> - <Hsp_evalue>4.62305e-36</Hsp_evalue> - <Hsp_query-from>3174</Hsp_query-from> - <Hsp_query-to>3368</Hsp_query-to> - <Hsp_hit-from>248</Hsp_hit-from> - <Hsp_hit-to>312</Hsp_hit-to> - <Hsp_query-frame>3</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>60</Hsp_identity> - <Hsp_positive>64</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>65</Hsp_align-len> - <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> - <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> - <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>3</Hsp_num> - <Hsp_bit-score>120.939</Hsp_bit-score> - <Hsp_score>302</Hsp_score> - <Hsp_evalue>2.85192e-33</Hsp_evalue> - <Hsp_query-from>2855</Hsp_query-from> - <Hsp_query-to>3022</Hsp_query-to> - <Hsp_hit-from>177</Hsp_hit-from> - <Hsp_hit-to>232</Hsp_hit-to> - <Hsp_query-frame>2</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>54</Hsp_identity> - <Hsp_positive>56</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>56</Hsp_align-len> - <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKE</Hsp_qseq> - <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKE</Hsp_hseq> - <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>4</Hsp_num> - <Hsp_bit-score>118.242</Hsp_bit-score> - <Hsp_score>295</Hsp_score> - <Hsp_evalue>2.16231e-32</Hsp_evalue> - <Hsp_query-from>1404</Hsp_query-from> - <Hsp_query-to>1580</Hsp_query-to> - <Hsp_hit-from>119</Hsp_hit-from> - <Hsp_hit-to>177</Hsp_hit-to> - <Hsp_query-frame>3</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>55</Hsp_identity> - <Hsp_positive>56</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>59</Hsp_align-len> - <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> - <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> - <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> - </Hsp> - <Hsp> - <Hsp_num>5</Hsp_num> - <Hsp_bit-score>56.225</Hsp_bit-score> - <Hsp_score>134</Hsp_score> - <Hsp_evalue>2.05678e-12</Hsp_evalue> - <Hsp_query-from>4222</Hsp_query-from> - <Hsp_query-to>4296</Hsp_query-to> - <Hsp_hit-from>312</Hsp_hit-from> - <Hsp_hit-to>336</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>23</Hsp_identity> - <Hsp_positive>24</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>25</Hsp_align-len> - <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> - <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> - <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>39</Statistics_hsp-len> - <Statistics_eff-space>430746</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>13</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> - <Iteration_query-len>983</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>28</Statistics_hsp-len> - <Statistics_eff-space>95680</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>14</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> - <Iteration_query-len>983</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>28</Statistics_hsp-len> - <Statistics_eff-space>95680</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>15</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> - <Iteration_query-len>983</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>28</Statistics_hsp-len> - <Statistics_eff-space>95680</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>16</Iteration_iter-num> - <Iteration_query-ID>Query_4</Iteration_query-ID> - <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> - <Iteration_query-len>983</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>613.994</Hsp_bit-score> - <Hsp_score>1582</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>978</Hsp_query-to> - <Hsp_hit-from>11</Hsp_hit-from> - <Hsp_hit-to>336</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>310</Hsp_identity> - <Hsp_positive>322</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>326</Hsp_align-len> - <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> - <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> - <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>28</Statistics_hsp-len> - <Statistics_eff-space>95680</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>17</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>102080</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>18</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>102080</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>19</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>102080</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>20</Iteration_iter-num> - <Iteration_query-ID>Query_5</Iteration_query-ID> - <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> - <Iteration_query-len>1047</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>641.728</Hsp_bit-score> - <Hsp_score>1654</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>1</Hsp_query-from> - <Hsp_query-to>1044</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>348</Hsp_hit-to> - <Hsp_query-frame>1</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>325</Hsp_identity> - <Hsp_positive>337</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>348</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> - <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>29</Statistics_hsp-len> - <Statistics_eff-space>102080</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - <Iteration> - <Iteration_iter-num>21</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> - <Iteration_query-len>1344</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>31</Statistics_hsp-len> - <Statistics_eff-space>132189</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>22</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> - <Iteration_query-len>1344</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>31</Statistics_hsp-len> - <Statistics_eff-space>132189</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>23</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> - <Iteration_query-len>1344</Iteration_query-len> - <Iteration_hits></Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>31</Statistics_hsp-len> - <Statistics_eff-space>132189</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - <Iteration_message>No hits found</Iteration_message> - </Iteration> - <Iteration> - <Iteration_iter-num>24</Iteration_iter-num> - <Iteration_query-ID>Query_6</Iteration_query-ID> - <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> - <Iteration_query-len>1344</Iteration_query-len> - <Iteration_hits> - <Hit> - <Hit_num>1</Hit_num> - <Hit_id>Subject_4</Hit_id> - <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> - <Hit_accession>Subject_4</Hit_accession> - <Hit_len>348</Hit_len> - <Hit_hsps> - <Hsp> - <Hsp_num>1</Hsp_num> - <Hsp_bit-score>559.296</Hsp_bit-score> - <Hsp_score>1440</Hsp_score> - <Hsp_evalue>0</Hsp_evalue> - <Hsp_query-from>23</Hsp_query-from> - <Hsp_query-to>1018</Hsp_query-to> - <Hsp_hit-from>1</Hsp_hit-from> - <Hsp_hit-to>332</Hsp_hit-to> - <Hsp_query-frame>2</Hsp_query-frame> - <Hsp_hit-frame>0</Hsp_hit-frame> - <Hsp_identity>272</Hsp_identity> - <Hsp_positive>307</Hsp_positive> - <Hsp_gaps>0</Hsp_gaps> - <Hsp_align-len>332</Hsp_align-len> - <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEED</Hsp_qseq> - <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> - <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++</Hsp_midline> - </Hsp> - </Hit_hsps> - </Hit> - </Iteration_hits> - <Iteration_stat> - <Statistics> - <Statistics_db-num>0</Statistics_db-num> - <Statistics_db-len>0</Statistics_db-len> - <Statistics_hsp-len>31</Statistics_hsp-len> - <Statistics_eff-space>132189</Statistics_eff-space> - <Statistics_kappa>0.041</Statistics_kappa> - <Statistics_lambda>0.267</Statistics_lambda> - <Statistics_entropy>0.14</Statistics_entropy> - </Statistics> - </Iteration_stat> - </Iteration> - </BlastOutput_iterations> -</BlastOutput> \ No newline at end of file +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>2</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>3</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>4</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>639.032</Hsp_bit-score> + <Hsp_score>1647</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>1044</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>348</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>336</Hsp_identity> + <Hsp_positive>343</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>5</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> + <Iteration_query-len>1574</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>33</Statistics_hsp-len> + <Statistics_eff-space>183143</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>6</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> + <Iteration_query-len>1574</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>33</Statistics_hsp-len> + <Statistics_eff-space>183143</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>7</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> + <Iteration_query-len>1574</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>33</Statistics_hsp-len> + <Statistics_eff-space>183143</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>8</Iteration_iter-num> + <Iteration_query-ID>Query_2</Iteration_query-ID> + <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def> + <Iteration_query-len>1574</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>551.206</Hsp_bit-score> + <Hsp_score>1419</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>42</Hsp_query-from> + <Hsp_query-to>1037</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>332</Hsp_hit-to> + <Hsp_query-frame>3</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>283</Hsp_identity> + <Hsp_positive>315</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>332</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE</Hsp_hseq> + <Hsp_midline>MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>33</Statistics_hsp-len> + <Statistics_eff-space>183143</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>9</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> + <Iteration_query-len>4301</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>40</Statistics_hsp-len> + <Statistics_eff-space>509838</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>10</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> + <Iteration_query-len>4301</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>40</Statistics_hsp-len> + <Statistics_eff-space>509838</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>11</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> + <Iteration_query-len>4301</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>40</Statistics_hsp-len> + <Statistics_eff-space>509838</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>12</Iteration_iter-num> + <Iteration_query-ID>Query_3</Iteration_query-ID> + <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def> + <Iteration_query-len>4301</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>220.32</Hsp_bit-score> + <Hsp_score>560</Hsp_score> + <Hsp_evalue>4.29169e-67</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>333</Hsp_query-to> + <Hsp_hit-from>11</Hsp_hit-from> + <Hsp_hit-to>121</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>107</Hsp_identity> + <Hsp_positive>109</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>111</Hsp_align-len> + <Hsp_qseq>VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_qseq> + <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_hseq> + <Hsp_midline>VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>127.487</Hsp_bit-score> + <Hsp_score>319</Hsp_score> + <Hsp_evalue>1.95079e-35</Hsp_evalue> + <Hsp_query-from>3174</Hsp_query-from> + <Hsp_query-to>3368</Hsp_query-to> + <Hsp_hit-from>248</Hsp_hit-from> + <Hsp_hit-to>312</Hsp_hit-to> + <Hsp_query-frame>3</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>60</Hsp_identity> + <Hsp_positive>64</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>65</Hsp_align-len> + <Hsp_qseq>KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ</Hsp_qseq> + <Hsp_hseq>KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ</Hsp_hseq> + <Hsp_midline>KEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>121.324</Hsp_bit-score> + <Hsp_score>303</Hsp_score> + <Hsp_evalue>1.96633e-33</Hsp_evalue> + <Hsp_query-from>2855</Hsp_query-from> + <Hsp_query-to>3031</Hsp_query-to> + <Hsp_hit-from>177</Hsp_hit-from> + <Hsp_hit-to>235</Hsp_hit-to> + <Hsp_query-frame>2</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>54</Hsp_identity> + <Hsp_positive>57</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>59</Hsp_align-len> + <Hsp_qseq>RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS</Hsp_qseq> + <Hsp_hseq>RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA</Hsp_hseq> + <Hsp_midline>RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE +</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>97.0561</Hsp_bit-score> + <Hsp_score>240</Hsp_score> + <Hsp_evalue>1.16473e-25</Hsp_evalue> + <Hsp_query-from>1404</Hsp_query-from> + <Hsp_query-to>1580</Hsp_query-to> + <Hsp_hit-from>119</Hsp_hit-from> + <Hsp_hit-to>177</Hsp_hit-to> + <Hsp_query-frame>3</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>55</Hsp_identity> + <Hsp_positive>56</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>59</Hsp_align-len> + <Hsp_qseq>LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR</Hsp_qseq> + <Hsp_hseq>LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR</Hsp_hseq> + <Hsp_midline>L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>56.9954</Hsp_bit-score> + <Hsp_score>136</Hsp_score> + <Hsp_evalue>1.23645e-12</Hsp_evalue> + <Hsp_query-from>4222</Hsp_query-from> + <Hsp_query-to>4299</Hsp_query-to> + <Hsp_hit-from>312</Hsp_hit-from> + <Hsp_hit-to>337</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>23</Hsp_identity> + <Hsp_positive>24</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>26</Hsp_align-len> + <Hsp_qseq>QFRNCMLTTLCCGKNPLGDDEASTTA</Hsp_qseq> + <Hsp_hseq>QFRNCMLTTICCGKNPLGDDEASATV</Hsp_hseq> + <Hsp_midline>QFRNCMLTT+CCGKNPLGDDEAS T </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>40</Statistics_hsp-len> + <Statistics_eff-space>509838</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>13</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> + <Iteration_query-len>983</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>112346</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>14</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> + <Iteration_query-len>983</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>112346</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>15</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> + <Iteration_query-len>983</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>112346</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>16</Iteration_iter-num> + <Iteration_query-ID>Query_4</Iteration_query-ID> + <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def> + <Iteration_query-len>983</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>589.341</Hsp_bit-score> + <Hsp_score>1518</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>978</Hsp_query-to> + <Hsp_hit-from>11</Hsp_hit-from> + <Hsp_hit-to>336</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>310</Hsp_identity> + <Hsp_positive>322</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>326</Hsp_align-len> + <Hsp_qseq>VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT</Hsp_qseq> + <Hsp_hseq>VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT</Hsp_hseq> + <Hsp_midline>VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>29</Statistics_hsp-len> + <Statistics_eff-space>112346</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>17</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>18</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>19</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>20</Iteration_iter-num> + <Iteration_query-ID>Query_5</Iteration_query-ID> + <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def> + <Iteration_query-len>1047</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>619.387</Hsp_bit-score> + <Hsp_score>1596</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>1044</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>348</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>325</Hsp_identity> + <Hsp_positive>337</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>348</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA</Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>30</Statistics_hsp-len> + <Statistics_eff-space>119944</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +<Iteration> + <Iteration_iter-num>21</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> + <Iteration_query-len>1344</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>32</Statistics_hsp-len> + <Statistics_eff-space>155584</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>22</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> + <Iteration_query-len>1344</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>32</Statistics_hsp-len> + <Statistics_eff-space>155584</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>23</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> + <Iteration_query-len>1344</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>32</Statistics_hsp-len> + <Statistics_eff-space>155584</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +<Iteration> + <Iteration_iter-num>24</Iteration_iter-num> + <Iteration_query-ID>Query_6</Iteration_query-ID> + <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def> + <Iteration_query-len>1344</Iteration_query-len> +<Iteration_hits> +<Hit> + <Hit_num>1</Hit_num> + <Hit_id>Subject_4</Hit_id> + <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def> + <Hit_accession>Subject_4</Hit_accession> + <Hit_len>348</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>532.717</Hsp_bit-score> + <Hsp_score>1371</Hsp_score> + <Hsp_evalue>0</Hsp_evalue> + <Hsp_query-from>23</Hsp_query-from> + <Hsp_query-to>1021</Hsp_query-to> + <Hsp_hit-from>1</Hsp_hit-from> + <Hsp_hit-to>333</Hsp_hit-to> + <Hsp_query-frame>2</Hsp_query-frame> + <Hsp_hit-frame>0</Hsp_hit-frame> + <Hsp_identity>272</Hsp_identity> + <Hsp_positive>307</Hsp_positive> + <Hsp_gaps>0</Hsp_gaps> + <Hsp_align-len>333</Hsp_align-len> + <Hsp_qseq>MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG</Hsp_qseq> + <Hsp_hseq>MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA</Hsp_hseq> + <Hsp_midline>MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLYVT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLGGEIALW LVVLAIER++VVCKP++NFRFGE+HAIMGV TW MALACA PPL GWSRYIPEGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA+YIFTHQGS FGPIFMTIP+FFAKS+A+YNP+IYI MNKQFR+CM+TT+CCGKNP +++ </Hsp_midline> + </Hsp> + </Hit_hsps> +</Hit> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>0</Statistics_db-num> + <Statistics_db-len>0</Statistics_db-len> + <Statistics_hsp-len>32</Statistics_hsp-len> + <Statistics_eff-space>155584</Statistics_eff-space> + <Statistics_kappa>0.041</Statistics_kappa> + <Statistics_lambda>0.267</Statistics_lambda> + <Statistics_entropy>0.14</Statistics_entropy> + </Statistics> + </Iteration_stat> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +