diff tools/ncbi_blast_plus/ncbi_macros.xml @ 17:697f40151eaf draft

v0.1.05 - Update citation information now GigaScience paper is out

--- a/tools/ncbi_blast_plus/ncbi_macros.xml	Wed Jul 22 05:01:11 2015 -0400
+++ b/tools/ncbi_blast_plus/ncbi_macros.xml	Fri Sep 04 09:45:57 2015 -0400
@@ -1,4 +1,9 @@
 <macros>
+    <token name="@WRAPPER_VERSION@">0.1.05</token>
+    <xml name="parallelism">
+        <!-- If job splitting is enabled, break up the query file into parts -->
+        <parallelism method="multi" split_inputs="query" split_mode="to_size" split_size="1000" merge_outputs="output1" />
+    </xml>
     <xml name="preamble">
         <requirements>
             <requirement type="binary">@BINARY@</requirement>
@@ -398,17 +403,12 @@
 #end if</token>
     <token name="@REFERENCES@">
 Peter J. A. Cock, John M. Chilton, Björn Grüning, James E. Johnson, Nicola Soranzo (2015).
-NCBI BLAST+ integrated into Galaxy. *BioRxiv* preprint.
-http://dx.doi.org/10.1101/014043
-
-Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
-Galaxy tools and workflows for sequence analysis with applications
-in molecular plant pathology. *PeerJ* 1:e167
-http://dx.doi.org/10.7717/peerj.167
+NCBI BLAST+ integrated into Galaxy. *GigaScience* 4:39
+http://dx.doi.org/10.1186/s13742-015-0080-7
 
 Christiam Camacho et al. (2009).
 BLAST+: architecture and applications.
-*BMC Bioinformatics*. 15;10:421.
+*BMC Bioinformatics* 15;10:421.
 http://dx.doi.org/10.1186/1471-2105-10-421
 
 This wrapper is available to install into other Galaxy Instances via the Galaxy
@@ -417,10 +417,7 @@
     <xml name="blast_citations">
         <citations>
             <citation type="doi">10.1186/1471-2105-10-421</citation>
-            <citation type="doi">10.7717/peerj.167</citation>
-            <!-- TODO - remove PeerJ paper once "NCBI BLAST+ integrated into Galaxy" formally published? -->
-            <citation type="doi">10.1101/014043</citation>
-            <!-- TODO - Update DOI once "NCBI BLAST+ integrated into Galaxy" formally published -->
+            <citation type="doi">10.1186/s13742-015-0080-7</citation>
         </citations>
     </xml>
     <token name="@OUTPUT_FORMAT@">**Output format**