diff tools/ncbi_blast_plus/blastxml_to_tabular.xml @ 10:70e7dcbf6573 draft

Uploaded v0.0.20, handles dependencies via package_blast_plus_2_2_26, development moved to GitHub, RST README, MIT licence, citation information, more tests, percentage identity option to BLASTN, cElementTree to ElementTree fallback.

--- a/tools/ncbi_blast_plus/blastxml_to_tabular.xml	Thu Apr 25 09:38:37 2013 -0400
+++ b/tools/ncbi_blast_plus/blastxml_to_tabular.xml	Mon Sep 23 06:14:13 2013 -0400
@@ -1,5 +1,6 @@
-<tool id="blastxml_to_tabular" name="BLAST XML to tabular" version="0.0.10">
+<tool id="blastxml_to_tabular" name="BLAST XML to tabular" version="0.0.11">
     <description>Convert BLAST XML output to tabular</description>
+    <version_command interpreter="python">blastxml_to_tabular.py --version</version_command>
     <command interpreter="python">
       blastxml_to_tabular.py $blastxml_file $tabular_file $out_format
     </command>
@@ -128,5 +129,17 @@
 low complexity (columns 21 and 22), and thus also calculated figures like
 the percentage identity (column 3).
 
+**References**
+
+If you use this Galaxy tool in work leading to a scientific publication please
+cite:
+
+Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
+Galaxy tools and workflows for sequence analysis with applications
+in molecular plant pathology. PeerJ 1:e167
+http://dx.doi.org/10.7717/peerj.167
+
+This wrapper is available to install into other Galaxy Instances via the Galaxy
+Tool Shed at http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
     </help>
 </tool>