Mercurial > repos > devteam > ncbi_blast_plus

diff test-data/blastx_rhodopsin_vs_four_human.xml @ 21:7538e2bfcd41 draft

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v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml
author peterjc
date Wed, 19 Apr 2017 05:27:19 -0400
parents 577d9c12411a
children 31e517610e1f
line wrap: on
line diff
--- a/test-data/blastx_rhodopsin_vs_four_human.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/blastx_rhodopsin_vs_four_human.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -2,7 +2,7 @@
 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
 <BlastOutput>
   <BlastOutput_program>blastx</BlastOutput_program>
-  <BlastOutput_version>BLASTX 2.2.31+</BlastOutput_version>
+  <BlastOutput_version>BLASTX 2.5.0+</BlastOutput_version>
   <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
   <BlastOutput_db></BlastOutput_db>
   <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
@@ -24,69 +24,9 @@
   <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
   <Iteration_query-len>1047</Iteration_query-len>
 <Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>2</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>3</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>4</Iteration_iter-num>
-  <Iteration_query-ID>Query_1</Iteration_query-ID>
-  <Iteration_query-def>gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -117,8 +57,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
+      <Statistics_hsp-len>45</Statistics_hsp-len>
+      <Statistics_eff-space>947568</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -126,74 +66,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>5</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
-  <Iteration_query-len>1574</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>33</Statistics_hsp-len>
-      <Statistics_eff-space>183143</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>6</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
-  <Iteration_query-len>1574</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>33</Statistics_hsp-len>
-      <Statistics_eff-space>183143</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>7</Iteration_iter-num>
-  <Iteration_query-ID>Query_2</Iteration_query-ID>
-  <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
-  <Iteration_query-len>1574</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>33</Statistics_hsp-len>
-      <Statistics_eff-space>183143</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>8</Iteration_iter-num>
+  <Iteration_iter-num>2</Iteration_iter-num>
   <Iteration_query-ID>Query_2</Iteration_query-ID>
   <Iteration_query-def>gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds</Iteration_query-def>
   <Iteration_query-len>1574</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -224,8 +104,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>33</Statistics_hsp-len>
-      <Statistics_eff-space>183143</Statistics_eff-space>
+      <Statistics_hsp-len>48</Statistics_hsp-len>
+      <Statistics_eff-space>1477980</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -233,74 +113,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>9</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
-  <Iteration_query-len>4301</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>40</Statistics_hsp-len>
-      <Statistics_eff-space>509838</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>10</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
-  <Iteration_query-len>4301</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>40</Statistics_hsp-len>
-      <Statistics_eff-space>509838</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>11</Iteration_iter-num>
-  <Iteration_query-ID>Query_3</Iteration_query-ID>
-  <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
-  <Iteration_query-len>4301</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>40</Statistics_hsp-len>
-      <Statistics_eff-space>509838</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>12</Iteration_iter-num>
+  <Iteration_iter-num>3</Iteration_iter-num>
   <Iteration_query-ID>Query_3</Iteration_query-ID>
   <Iteration_query-def>gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds</Iteration_query-def>
   <Iteration_query-len>4301</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -309,7 +129,7 @@
       <Hsp_num>1</Hsp_num>
       <Hsp_bit-score>220.705</Hsp_bit-score>
       <Hsp_score>561</Hsp_score>
-      <Hsp_evalue>3.21377e-67</Hsp_evalue>
+      <Hsp_evalue>3.78353e-67</Hsp_evalue>
       <Hsp_query-from>1</Hsp_query-from>
       <Hsp_query-to>333</Hsp_query-to>
       <Hsp_hit-from>11</Hsp_hit-from>
@@ -328,7 +148,7 @@
       <Hsp_num>2</Hsp_num>
       <Hsp_bit-score>127.487</Hsp_bit-score>
       <Hsp_score>319</Hsp_score>
-      <Hsp_evalue>1.95079e-35</Hsp_evalue>
+      <Hsp_evalue>4.12812e-35</Hsp_evalue>
       <Hsp_query-from>3174</Hsp_query-from>
       <Hsp_query-to>3368</Hsp_query-to>
       <Hsp_hit-from>248</Hsp_hit-from>
@@ -347,7 +167,7 @@
       <Hsp_num>3</Hsp_num>
       <Hsp_bit-score>121.709</Hsp_bit-score>
       <Hsp_score>304</Hsp_score>
-      <Hsp_evalue>1.62516e-33</Hsp_evalue>
+      <Hsp_evalue>3.99023e-33</Hsp_evalue>
       <Hsp_query-from>2855</Hsp_query-from>
       <Hsp_query-to>3031</Hsp_query-to>
       <Hsp_hit-from>177</Hsp_hit-from>
@@ -366,7 +186,7 @@
       <Hsp_num>4</Hsp_num>
       <Hsp_bit-score>97.0561</Hsp_bit-score>
       <Hsp_score>240</Hsp_score>
-      <Hsp_evalue>1.16473e-25</Hsp_evalue>
+      <Hsp_evalue>7.46148e-25</Hsp_evalue>
       <Hsp_query-from>1404</Hsp_query-from>
       <Hsp_query-to>1580</Hsp_query-to>
       <Hsp_hit-from>119</Hsp_hit-from>
@@ -385,7 +205,7 @@
       <Hsp_num>5</Hsp_num>
       <Hsp_bit-score>56.9954</Hsp_bit-score>
       <Hsp_score>136</Hsp_score>
-      <Hsp_evalue>1.23645e-12</Hsp_evalue>
+      <Hsp_evalue>1.12842e-11</Hsp_evalue>
       <Hsp_query-from>4222</Hsp_query-from>
       <Hsp_query-to>4299</Hsp_query-to>
       <Hsp_hit-from>312</Hsp_hit-from>
@@ -407,8 +227,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>40</Statistics_hsp-len>
-      <Statistics_eff-space>509838</Statistics_eff-space>
+      <Statistics_hsp-len>55</Statistics_hsp-len>
+      <Statistics_eff-space>4240106</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -416,74 +236,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>13</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
-  <Iteration_query-len>983</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>112346</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>14</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
-  <Iteration_query-len>983</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>112346</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>15</Iteration_iter-num>
-  <Iteration_query-ID>Query_4</Iteration_query-ID>
-  <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
-  <Iteration_query-len>983</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>112346</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>16</Iteration_iter-num>
+  <Iteration_iter-num>4</Iteration_iter-num>
   <Iteration_query-ID>Query_4</Iteration_query-ID>
   <Iteration_query-def>gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds</Iteration_query-def>
   <Iteration_query-len>983</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -514,8 +274,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>29</Statistics_hsp-len>
-      <Statistics_eff-space>112346</Statistics_eff-space>
+      <Statistics_hsp-len>44</Statistics_hsp-len>
+      <Statistics_eff-space>883243</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -523,74 +283,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>17</Iteration_iter-num>
-  <Iteration_query-ID>Query_5</Iteration_query-ID>
-  <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>18</Iteration_iter-num>
-  <Iteration_query-ID>Query_5</Iteration_query-ID>
-  <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>19</Iteration_iter-num>
-  <Iteration_query-ID>Query_5</Iteration_query-ID>
-  <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1047</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>20</Iteration_iter-num>
+  <Iteration_iter-num>5</Iteration_iter-num>
   <Iteration_query-ID>Query_5</Iteration_query-ID>
   <Iteration_query-def>gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds</Iteration_query-def>
   <Iteration_query-len>1047</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -621,8 +321,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>30</Statistics_hsp-len>
-      <Statistics_eff-space>119944</Statistics_eff-space>
+      <Statistics_hsp-len>45</Statistics_hsp-len>
+      <Statistics_eff-space>947568</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>
@@ -630,74 +330,14 @@
   </Iteration_stat>
 </Iteration>
 <Iteration>
-  <Iteration_iter-num>21</Iteration_iter-num>
-  <Iteration_query-ID>Query_6</Iteration_query-ID>
-  <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1344</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>32</Statistics_hsp-len>
-      <Statistics_eff-space>155584</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>22</Iteration_iter-num>
-  <Iteration_query-ID>Query_6</Iteration_query-ID>
-  <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1344</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>32</Statistics_hsp-len>
-      <Statistics_eff-space>155584</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>23</Iteration_iter-num>
-  <Iteration_query-ID>Query_6</Iteration_query-ID>
-  <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
-  <Iteration_query-len>1344</Iteration_query-len>
-<Iteration_hits>
-</Iteration_hits>
-  <Iteration_stat>
-    <Statistics>
-      <Statistics_db-num>0</Statistics_db-num>
-      <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>32</Statistics_hsp-len>
-      <Statistics_eff-space>155584</Statistics_eff-space>
-      <Statistics_kappa>0.041</Statistics_kappa>
-      <Statistics_lambda>0.267</Statistics_lambda>
-      <Statistics_entropy>0.14</Statistics_entropy>
-    </Statistics>
-  </Iteration_stat>
-  <Iteration_message>No hits found</Iteration_message>
-</Iteration>
-<Iteration>
-  <Iteration_iter-num>24</Iteration_iter-num>
+  <Iteration_iter-num>6</Iteration_iter-num>
   <Iteration_query-ID>Query_6</Iteration_query-ID>
   <Iteration_query-def>gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds</Iteration_query-def>
   <Iteration_query-len>1344</Iteration_query-len>
 <Iteration_hits>
 <Hit>
   <Hit_num>1</Hit_num>
-  <Hit_id>Subject_4</Hit_id>
+  <Hit_id>sp|P08100|OPSD_HUMAN</Hit_id>
   <Hit_def>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1</Hit_def>
   <Hit_accession>Subject_4</Hit_accession>
   <Hit_len>348</Hit_len>
@@ -728,8 +368,8 @@
     <Statistics>
       <Statistics_db-num>0</Statistics_db-num>
       <Statistics_db-len>0</Statistics_db-len>
-      <Statistics_hsp-len>32</Statistics_hsp-len>
-      <Statistics_eff-space>155584</Statistics_eff-space>
+      <Statistics_hsp-len>47</Statistics_hsp-len>
+      <Statistics_eff-space>1246709</Statistics_eff-space>
       <Statistics_kappa>0.041</Statistics_kappa>
       <Statistics_lambda>0.267</Statistics_lambda>
       <Statistics_entropy>0.14</Statistics_entropy>