ncbi_blast_plus: revision graph

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v0.3.0 Updated for NCBI BLAST+ 2.7.1 draft
Sat, 30 Jun 2018 17:22:46 -0400, by peterjc
v0.2.01 add -max_hsps, -use_sw_tback; lists args; internal updates draft
Mon, 18 Sep 2017 06:21:27 -0400, by peterjc
v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml draft
Wed, 19 Apr 2017 05:27:19 -0400, by peterjc
Uploaded v0.1.08, can search multiple local databases, fixes a pipe problem in blastdbcmd, and minor internal changes. draft
Mon, 07 Nov 2016 11:31:37 -0500, by peterjc
v0.1.07 - fix macro problem in blastxml_to_tabular.xml, reenable .loc tests draft
Thu, 19 Nov 2015 06:30:35 -0500, by peterjc
v0.1.06, now using BLAST+ 2.2.31 draft
Mon, 07 Sep 2015 04:44:24 -0400, by peterjc
v0.1.05 - Update citation information now GigaScience paper is out draft
Fri, 04 Sep 2015 09:45:57 -0400, by peterjc
Uploaded v0.1.04, fix regression with BLAST database from history draft
Wed, 22 Jul 2015 05:01:11 -0400, by peterjc
Uploaded v0.1.03 (internal changes); v0.1.02 (BLAST+ 2.2.30 etc) draft
Sun, 05 Jul 2015 10:37:27 -0400, by peterjc
Uploaded v0.1.01 - Requires blastdbd datatype (blast_datatypes v0.0.19). Support for makeprofiledb to create protein domain databases and use them in RPS-BLAST and RPS-TBLASTN. Tools now support GI and SeqID filters, and embed the citations. draft
Mon, 01 Dec 2014 05:59:16 -0500, by peterjc
Uploaded v0.1.00, uses BLAST+ 2.2.29, allows custom column selection for tabular output - including taxonomy fields. draft
Fri, 14 Mar 2014 07:40:46 -0400, by peterjc
Re-uploaded v0.0.22, in order to update the blast_datatypes dependency draft
Tue, 21 Jan 2014 13:37:01 -0500, by peterjc
Uploaded v0.0.22, now wraps BLAST+ 2.2.28 allowing extended tabular output to include the hit descriptions as column 25. draft
Thu, 05 Dec 2013 06:55:59 -0500, by peterjc
Uploaded v0.0.20, handles dependencies via package_blast_plus_2_2_26, development moved to GitHub, RST README, MIT licence, citation information, more tests, percentage identity option to BLASTN, cElementTree to ElementTree fallback. draft
Mon, 23 Sep 2013 06:14:13 -0400, by peterjc
Uploaded v0.0.19, adds wrappers for rpsblast and rpstblastn with new blastdb_d.loc file for their protein domain database. draft
Thu, 25 Apr 2013 09:38:37 -0400, by peterjc
Uploaded v0.0.17, default to extended 24 column tabular output (rather than standard 12 column output). This should avoid many cases of repeated BLAST jobs being run due to later needing the extra columns. draft
Tue, 19 Feb 2013 12:49:43 -0500, by peterjc
Uploaded v0.0.16, declares explicit dependency on the 'blast_datatypes' repository. draft
Fri, 08 Feb 2013 05:51:26 -0500, by peterjc
Uploaded v0.0.15, clearer warning about searching against a FASTA file. draft
Thu, 24 Jan 2013 12:40:41 -0500, by peterjc
Uploaded v0.0.14 adding local BLAST database support. draft
Fri, 09 Nov 2012 06:53:55 -0500, by peterjc
Uploaded v0.0.13 which uses the recently added error handling. No longer bundles the hide_stderr.py script which is now redundant. draft
Wed, 19 Sep 2012 13:08:31 -0400, by peterjc
Uploaded v0.0.12b, same code but moving folders around to match all my other tools and make future development simpler. draft
Thu, 23 Aug 2012 09:00:40 -0400, by peterjc
Uploaded v0.0.12 again, without extra path draft
Thu, 23 Aug 2012 07:32:06 -0400, by peterjc
Uploaded v0.0.12 of the NCBI BLAST+ wrappers. draft
Thu, 23 Aug 2012 07:24:38 -0400, by peterjc
Uploaded draft
Fri, 17 Aug 2012 09:11:43 -0400, by devteam

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