# HG changeset patch # User peterjc # Date 1492594039 14400 # Node ID 7538e2bfcd41434d3d293390c53acff224a55240 # Parent 3034ce97dd33165d553db941485cf125f41155a3 v0.2.00, for NCBI BLAST+ 2.5.0 via bioconda or tool_dependencies.xml diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_arabidopsis.extended.tabular --- a/test-data/blastn_arabidopsis.extended.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_arabidopsis.extended.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,1 +1,1 @@ -chunk_of_plant chrIII 100.00 630 0 0 1 630 4341 4970 0.0 1164 chrIII 630 630 630 0 100.00 1 1 GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT 630 23459830 gi|240255695|ref|NC_003074.8| Arabidopsis thaliana chromosome 3, complete sequence +chunk_of_plant chrIII 100.000 630 0 0 1 630 4341 4970 0.0 1164 chrIII 630 630 630 0 100.00 1 1 GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT GATGTTCAATACTGTTTCCAACAAAAAGATTGTTGTCCTCGAGTTCGCCTTCAAGAAAGACACGAGAGAGACTCCAGCCATTGACGTCTGCAAAGGTTTGTTAGGAGACAAGGCCCGAATCAGCATCTATGATCCACAAGTCACGGAAGAACAAATCCAAAGAGACTTAACCATGAACACATTCGACTGGGACCATCCACTTCACCTCCAACCCATGAGTCCAACCACTGTGAAACAAGTCTCAGTTGCTTGGGACGCTTACGCTGCCACCAAAGACGCCCACGGAATCTGCTTGTTAACCGAGTGGGACGAGTATAAGACGCTTGACTATGAGCGGATTTTTGAAAACATGCAGAAACCAGCGTTTGTCTTCGATGGCAGAAATGTTTTTGATGCAGAGAAGCTGAGGAAGATAGGGTTTATTGTTTACTCTATTGGTAAGCCGTTGGACCAGTGGCACATGCCTGCTCTTGCTTAGCTCAGACTCTTTGCCCTTTCTCAAGATTTGGATTGTTTTTCTCTCTGTTGCTTATATCAAATAATTTGTTCTGTTTCTTCTTGACGAGATATTTTCCTATACTTATTATGTTGGTTAGAACAAGAGACTAGGTTTGGTTATTATTGCTAACT 630 23459830 gi|240255695|ref|NC_003074.8| Arabidopsis thaliana chromosome 3, complete sequence diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_arabidopsis.standard.tabular --- a/test-data/blastn_arabidopsis.standard.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_arabidopsis.standard.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,1 +1,1 @@ -chunk_of_plant chrIII 100.00 630 0 0 1 630 4341 4970 0.0 1164 +chunk_of_plant chrIII 100.000 630 0 0 1 630 4341 4970 0.0 1164 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_chimera_vs_rhodopsin_db.tabular --- a/test-data/blastn_chimera_vs_rhodopsin_db.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_chimera_vs_rhodopsin_db.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,8 +1,8 @@ -chimera gi|57163782|ref|NM_001009242.1| 92.31 1014 78 0 8881 9894 34 1047 0.0 1441 -chimera gi|283855822|gb|GQ290312.1| 91.53 956 81 0 8881 9836 4 959 0.0 1317 -chimera gi|18148870|dbj|AB062417.1| 87.65 1012 123 2 8884 9894 37 1047 0.0 1175 -chimera gi|283855845|gb|GQ290303.1| 91.52 330 28 0 8881 9210 4 333 8e-130 455 -chimera gi|283855845|gb|GQ290303.1| 91.36 243 19 2 9542 9783 3127 3368 1e-92 331 -chimera gi|283855845|gb|GQ290303.1| 94.22 173 10 0 9208 9380 1410 1582 1e-72 265 -chimera gi|283855845|gb|GQ290303.1| 92.94 170 12 0 9375 9544 2854 3023 2e-67 248 -chimera gi|283855845|gb|GQ290303.1| 95.59 68 3 0 9781 9848 4222 4289 7e-26 110 +chimera NM_001009242 92.308 1014 78 0 8881 9894 34 1047 0.0 1441 +chimera GQ290312 91.527 956 81 0 8881 9836 4 959 0.0 1317 +chimera AB062417 87.586 1015 124 2 8881 9894 34 1047 0.0 1175 +chimera GQ290303 91.515 330 28 0 8881 9210 4 333 8.28e-130 455 +chimera GQ290303 91.358 243 19 2 9542 9783 3127 3368 1.46e-92 331 +chimera GQ290303 94.220 173 10 0 9208 9380 1410 1582 1.50e-72 265 +chimera GQ290303 92.941 170 12 0 9375 9544 2854 3023 1.51e-67 248 +chimera GQ290303 95.588 68 3 0 9781 9848 4222 4289 7.43e-26 110 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_chimera_vs_three_human_and_rhodopsin_db.tabular --- a/test-data/blastn_chimera_vs_three_human_and_rhodopsin_db.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_chimera_vs_three_human_and_rhodopsin_db.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,11 +1,11 @@ -chimera ENA|AB011145|AB011145.1 100.00 4560 0 0 1 4560 121 4680 0.0 8421 -chimera ENA|M10051|M10051.1 99.93 4331 3 0 4560 8890 60 4390 0.0 7982 -chimera ENA|BC112106|BC112106.1 100.00 1093 0 0 8881 9973 121 1213 0.0 2019 -chimera gi|57163782|ref|NM_001009242.1| 92.31 1014 78 0 8881 9894 34 1047 0.0 1441 -chimera gi|283855822|gb|GQ290312.1| 91.53 956 81 0 8881 9836 4 959 0.0 1317 -chimera gi|18148870|dbj|AB062417.1| 87.65 1012 123 2 8884 9894 37 1047 0.0 1175 -chimera gi|283855845|gb|GQ290303.1| 91.52 330 28 0 8881 9210 4 333 2e-129 455 -chimera gi|283855845|gb|GQ290303.1| 91.36 243 19 2 9542 9783 3127 3368 3e-92 331 -chimera gi|283855845|gb|GQ290303.1| 94.22 173 10 0 9208 9380 1410 1582 3e-72 265 -chimera gi|283855845|gb|GQ290303.1| 92.94 170 12 0 9375 9544 2854 3023 3e-67 248 -chimera gi|283855845|gb|GQ290303.1| 95.59 68 3 0 9781 9848 4222 4289 2e-25 110 +chimera ENA|AB011145|AB011145.1 100.000 4560 0 0 1 4560 121 4680 0.0 8421 +chimera ENA|M10051|M10051.1 99.931 4331 3 0 4560 8890 60 4390 0.0 7982 +chimera ENA|BC112106|BC112106.1 100.000 1093 0 0 8881 9973 121 1213 0.0 2019 +chimera NM_001009242 92.308 1014 78 0 8881 9894 34 1047 0.0 1441 +chimera GQ290312 91.527 956 81 0 8881 9836 4 959 0.0 1317 +chimera AB062417 87.586 1015 124 2 8881 9894 34 1047 0.0 1175 +chimera GQ290303 91.515 330 28 0 8881 9210 4 333 1.70e-129 455 +chimera GQ290303 91.358 243 19 2 9542 9783 3127 3368 2.98e-92 331 +chimera GQ290303 94.220 173 10 0 9208 9380 1410 1582 3.07e-72 265 +chimera GQ290303 92.941 170 12 0 9375 9544 2854 3023 3.09e-67 248 +chimera GQ290303 95.588 68 3 0 9781 9848 4222 4289 1.52e-25 110 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_chimera_vs_three_human_db.tabular --- a/test-data/blastn_chimera_vs_three_human_db.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_chimera_vs_three_human_db.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,3 +1,3 @@ -chimera ENA|AB011145|AB011145.1 100.00 4560 0 0 1 4560 121 4680 0.0 8421 -chimera ENA|M10051|M10051.1 99.93 4331 3 0 4560 8890 60 4390 0.0 7982 -chimera ENA|BC112106|BC112106.1 100.00 1093 0 0 8881 9973 121 1213 0.0 2019 +chimera ENA|AB011145|AB011145.1 100.000 4560 0 0 1 4560 121 4680 0.0 8421 +chimera ENA|M10051|M10051.1 99.931 4331 3 0 4560 8890 60 4390 0.0 7982 +chimera ENA|BC112106|BC112106.1 100.000 1093 0 0 8881 9973 121 1213 0.0 2019 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_chimera_vs_three_human_max1.tabular --- a/test-data/blastn_chimera_vs_three_human_max1.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_chimera_vs_three_human_max1.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,1 +1,1 @@ -chimera ENA|AB011145|AB011145.1 100.00 4560 0 0 1 4560 121 4680 0.0 8421 +chimera ENA|AB011145|AB011145.1 100.000 4560 0 0 1 4560 121 4680 0.0 8421 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_chimera_vs_three_human_max1.txt --- a/test-data/blastn_chimera_vs_three_human_max1.txt Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_chimera_vs_three_human_max1.txt Wed Apr 19 05:27:19 2017 -0400 @@ -1,4 +1,4 @@ -BLASTN 2.2.31+ +BLASTN 2.5.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb @@ -346,7 +346,7 @@ Database: Just 3 human mRNA sequences - Posted date: Jul 4, 2015 3:35 PM + Posted date: Dec 2, 2016 10:38 AM Number of letters in database: 10,732 Number of sequences in database: 3 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_rhodopsin_vs_three_human.columns.tabular --- a/test-data/blastn_rhodopsin_vs_three_human.columns.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_rhodopsin_vs_three_human.columns.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,7 +1,7 @@ -gi|57163782|ref|NM_001009242.1| ENA|BC112106|BC112106.1 92.07 1047 1213 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.59 4301 1213 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.36 4301 1213 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 94.22 4301 1213 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 92.94 4301 1213 -gi|283855822|gb|GQ290312.1| ENA|BC112106|BC112106.1 91.55 983 1213 -gi|18148870|dbj|AB062417.1| ENA|BC112106|BC112106.1 87.50 1047 1213 +gi|57163782|ref|NM_001009242.1| ENA|BC112106|BC112106.1 92.073 1047 1213 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.592 4301 1213 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.358 4301 1213 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 94.220 4301 1213 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 92.941 4301 1213 +gi|283855822|gb|GQ290312.1| ENA|BC112106|BC112106.1 91.554 983 1213 +gi|18148870|dbj|AB062417.1| ENA|BC112106|BC112106.1 87.500 1047 1213 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_rhodopsin_vs_three_human.tabular --- a/test-data/blastn_rhodopsin_vs_three_human.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_rhodopsin_vs_three_human.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,7 +1,7 @@ -gi|57163782|ref|NM_001009242.1| ENA|BC112106|BC112106.1 92.07 1047 83 0 1 1047 88 1134 0.0 1474 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.59 333 28 0 1 333 118 450 4e-132 460 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.36 243 19 2 3127 3368 782 1023 3e-93 331 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 94.22 173 10 0 1410 1582 448 620 3e-73 265 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 92.94 170 12 0 2854 3023 615 784 3e-68 248 -gi|283855822|gb|GQ290312.1| ENA|BC112106|BC112106.1 91.55 959 81 0 1 959 118 1076 0.0 1323 -gi|18148870|dbj|AB062417.1| ENA|BC112106|BC112106.1 87.50 1048 129 2 1 1047 88 1134 0.0 1208 +gi|57163782|ref|NM_001009242.1| ENA|BC112106|BC112106.1 92.073 1047 83 0 1 1047 88 1134 0.0 1474 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.592 333 28 0 1 333 118 450 8.03e-132 460 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.358 243 19 2 3127 3368 782 1023 6.57e-93 331 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 94.220 173 10 0 1410 1582 448 620 6.76e-73 265 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 92.941 170 12 0 2854 3023 615 784 6.81e-68 248 +gi|283855822|gb|GQ290312.1| ENA|BC112106|BC112106.1 91.554 959 81 0 1 959 118 1076 0.0 1323 +gi|18148870|dbj|AB062417.1| ENA|BC112106|BC112106.1 87.500 1048 129 2 1 1047 88 1134 0.0 1208 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_rhodopsin_vs_three_human.xml --- a/test-data/blastn_rhodopsin_vs_three_human.xml Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_rhodopsin_vs_three_human.xml Wed Apr 19 05:27:19 2017 -0400 @@ -2,7 +2,7 @@ blastn - BLASTN 2.2.31+ + BLASTN 2.5.0+ Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Query_1 @@ -25,49 +25,9 @@ gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA 1047 - - - - 0 - 0 - 15 - 4933992 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 2 - Query_1 - gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA - 1047 - - - - - 0 - 0 - 15 - 4933992 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 3 - Query_1 - gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA - 1047 - 1 - Subject_3 + ENA|BC112106|BC112106.1 ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds Subject_3 1213 @@ -98,8 +58,8 @@ 0 0 - 15 - 4933992 + 16 + 11015204 0.46 1.28 0.85 @@ -107,47 +67,7 @@ - 4 - Query_2 - gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds - 1574 - - - - - 0 - 0 - 15 - 7453579 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 5 - Query_2 - gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds - 1574 - - - - - 0 - 0 - 15 - 7453579 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 6 + 2 Query_2 gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds 1574 @@ -157,28 +77,8 @@ 0 0 - 15 - 7453579 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 7 - Query_3 - gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds - 4301 - - - - - 0 - 0 16 - 20482300 + 16645672 0.46 1.28 0.85 @@ -187,34 +87,14 @@ No hits found - 8 - Query_3 - gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds - 4301 - - - - - 0 - 0 - 16 - 20482300 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 9 + 3 Query_3 gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds 4301 1 - Subject_3 + ENA|BC112106|BC112106.1 ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds Subject_3 1213 @@ -223,7 +103,7 @@ 1 460.936 249 - 3.59583e-132 + 8.03308e-132 1 333 118 @@ -242,7 +122,7 @@ 2 331.671 179 - 2.94161e-93 + 6.57155e-93 3127 3368 782 @@ -261,7 +141,7 @@ 3 265.191 143 - 3.02604e-73 + 6.76016e-73 1410 1582 448 @@ -280,7 +160,7 @@ 4 248.571 134 - 3.04752e-68 + 6.80816e-68 2854 3023 615 @@ -302,8 +182,8 @@ 0 0 - 16 - 20482300 + 17 + 45757404 0.46 1.28 0.85 @@ -311,54 +191,14 @@ - 10 - Query_4 - gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds - 983 - - - - - 0 - 0 - 15 - 4628008 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 11 - Query_4 - gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds - 983 - - - - - 0 - 0 - 15 - 4628008 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 12 + 4 Query_4 gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds 983 1 - Subject_3 + ENA|BC112106|BC112106.1 ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds Subject_3 1213 @@ -389,8 +229,8 @@ 0 0 - 15 - 4628008 + 16 + 10331428 0.46 1.28 0.85 @@ -398,54 +238,14 @@ - 13 - Query_5 - gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds - 1047 - - - - - 0 - 0 - 15 - 4933992 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 14 - Query_5 - gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds - 1047 - - - - - 0 - 0 - 15 - 4933992 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 15 + 5 Query_5 gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds 1047 1 - Subject_3 + ENA|BC112106|BC112106.1 ENA|BC112106|BC112106.1 Homo sapiens rhodopsin, mRNA (cDNA clone MGC:138311 IMAGE:8327574), complete cds Subject_3 1213 @@ -476,8 +276,8 @@ 0 0 - 15 - 4933992 + 16 + 11015204 0.46 1.28 0.85 @@ -485,7 +285,7 @@ - 16 + 6 Query_6 gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds 1344 @@ -495,48 +295,8 @@ 0 0 - 15 - 6353949 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 17 - Query_6 - gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds - 1344 - - - - - 0 - 0 - 15 - 6353949 - 0.46 - 1.28 - 0.85 - - - No hits found - - - 18 - Query_6 - gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds - 1344 - - - - - 0 - 0 - 15 - 6353949 + 16 + 14188352 0.46 1.28 0.85 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastn_rhodopsin_vs_three_human_converted.tabular --- a/test-data/blastn_rhodopsin_vs_three_human_converted.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastn_rhodopsin_vs_three_human_converted.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,7 +1,7 @@ -gi|57163782|ref|NM_001009242.1| ENA|BC112106|BC112106.1 92.07 1047 83 0 1 1047 88 1134 0.0 1474 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.59 333 28 0 1 333 118 450 4e-132 460 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.36 243 19 2 3127 3368 782 1023 3e-93 331 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 94.22 173 10 0 1410 1582 448 620 3e-73 265 -gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 92.94 170 12 0 2854 3023 615 784 3e-68 248 -gi|283855822|gb|GQ290312.1| ENA|BC112106|BC112106.1 91.55 959 81 0 1 959 118 1076 0.0 1323 -gi|18148870|dbj|AB062417.1| ENA|BC112106|BC112106.1 87.50 1048 129 2 1 1047 88 1134 0.0 1208 +gi|57163782|ref|NM_001009242.1| ENA|BC112106|BC112106.1 92.073 1047 83 0 1 1047 88 1134 0.0 1474 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.592 333 28 0 1 333 118 450 8e-132 460 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 91.358 243 19 2 3127 3368 782 1023 7e-93 331 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 94.220 173 10 0 1410 1582 448 620 7e-73 265 +gi|283855845|gb|GQ290303.1| ENA|BC112106|BC112106.1 92.941 170 12 0 2854 3023 615 784 7e-68 248 +gi|283855822|gb|GQ290312.1| ENA|BC112106|BC112106.1 91.554 959 81 0 1 959 118 1076 0.0 1323 +gi|18148870|dbj|AB062417.1| ENA|BC112106|BC112106.1 87.500 1048 129 2 1 1047 88 1134 0.0 1208 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_four_human_vs_rhodopsin.tabular --- a/test-data/blastp_four_human_vs_rhodopsin.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_four_human_vs_rhodopsin.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,6 +1,6 @@ -sp|P08100|OPSD_HUMAN gi|57163783|ref|NP_001009242.1| 96.55 348 12 0 1 348 1 348 0.0 701 -sp|P08100|OPSD_HUMAN gi|3024260|sp|P56514.1|OPSD_BUFBU 84.80 342 51 1 1 341 1 342 0.0 619 -sp|P08100|OPSD_HUMAN gi|283855846|gb|ADB45242.1| 94.82 328 17 0 11 338 1 328 0.0 653 -sp|P08100|OPSD_HUMAN gi|283855823|gb|ADB45229.1| 94.82 328 17 0 11 338 1 328 0.0 631 -sp|P08100|OPSD_HUMAN gi|223523|prf||0811197A 93.10 348 23 1 1 348 1 347 0.0 673 -sp|P08100|OPSD_HUMAN gi|12583665|dbj|BAB21486.1| 82.16 342 60 1 1 341 1 342 0.0 599 +P08100 NP_001009242 96.552 348 12 0 1 348 1 348 0.0 701 +P08100 0811197A 93.103 348 23 1 1 348 1 347 0.0 673 +P08100 ADB45242 94.817 328 17 0 11 338 1 328 0.0 653 +P08100 ADB45229 94.817 328 17 0 11 338 1 328 0.0 631 +P08100 P56514 84.795 342 51 1 1 341 1 342 0.0 619 +P08100 BAB21486 82.164 342 60 1 1 341 1 342 0.0 599 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_four_human_vs_rhodopsin.xml --- a/test-data/blastp_four_human_vs_rhodopsin.xml Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_four_human_vs_rhodopsin.xml Wed Apr 19 05:27:19 2017 -0400 @@ -2,10 +2,10 @@ blastp - BLASTP 2.2.31+ + BLASTP 2.5.0+ Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. - sp|Q9BS26|ERP44_HUMAN + Q9BS26 Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1 406 @@ -20,7 +20,7 @@ 1 - sp|Q9BS26|ERP44_HUMAN + Q9BS26 Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1 406 @@ -29,8 +29,8 @@ 0 0 - 30 - 119568 + 42 + 657748 0.041 0.267 0.14 @@ -40,17 +40,17 @@ 2 - sp|Q9BS26|ERP44_HUMAN - Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1 - 406 + Q9NSY1 + BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2 + 1161 0 0 - 30 - 119568 + 50 + 1954249 0.041 0.267 0.14 @@ -60,17 +60,17 @@ 3 - sp|Q9BS26|ERP44_HUMAN - Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1 - 406 + P06213 + Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4 + 1382 0 0 - 30 - 119568 + 51 + 2333243 0.041 0.267 0.14 @@ -80,307 +80,7 @@ 4 - sp|Q9BS26|ERP44_HUMAN - Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1 - 406 - - - - - 0 - 0 - 30 - 119568 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 5 - sp|Q9BS26|ERP44_HUMAN - Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1 - 406 - - - - - 0 - 0 - 30 - 119568 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 6 - sp|Q9BS26|ERP44_HUMAN - Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1 - 406 - - - - - 0 - 0 - 30 - 119568 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 7 - sp|Q9NSY1|BMP2K_HUMAN - BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2 - 1161 - - - - - 0 - 0 - 38 - 348130 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 8 - sp|Q9NSY1|BMP2K_HUMAN - BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2 - 1161 - - - - - 0 - 0 - 38 - 348130 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 9 - sp|Q9NSY1|BMP2K_HUMAN - BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2 - 1161 - - - - - 0 - 0 - 38 - 348130 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 10 - sp|Q9NSY1|BMP2K_HUMAN - BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2 - 1161 - - - - - 0 - 0 - 38 - 348130 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 11 - sp|Q9NSY1|BMP2K_HUMAN - BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2 - 1161 - - - - - 0 - 0 - 38 - 348130 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 12 - sp|Q9NSY1|BMP2K_HUMAN - BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2 - 1161 - - - - - 0 - 0 - 38 - 348130 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 13 - sp|P06213|INSR_HUMAN - Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4 - 1382 - - - - - 0 - 0 - 39 - 414987 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 14 - sp|P06213|INSR_HUMAN - Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4 - 1382 - - - - - 0 - 0 - 39 - 414987 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 15 - sp|P06213|INSR_HUMAN - Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4 - 1382 - - - - - 0 - 0 - 39 - 414987 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 16 - sp|P06213|INSR_HUMAN - Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4 - 1382 - - - - - 0 - 0 - 39 - 414987 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 17 - sp|P06213|INSR_HUMAN - Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4 - 1382 - - - - - 0 - 0 - 39 - 414987 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 18 - sp|P06213|INSR_HUMAN - Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4 - 1382 - - - - - 0 - 0 - 39 - 414987 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 19 - sp|P08100|OPSD_HUMAN + P08100 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 348 @@ -412,74 +112,36 @@ - - - - 0 - 0 - 29 - 101761 - 0.041 - 0.267 - 0.14 - - - - - 20 - sp|P08100|OPSD_HUMAN - Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 - 348 - - 1 - gi|3024260|sp|P56514.1|OPSD_BUFBU - RecName: Full=Rhodopsin - P56514 - 354 + 2 + gi|223523|prf||0811197A + rhodopsin [Bos taurus] + 0811197A + 347 1 - 619.002 - 1595 + 673.315 + 1736 0 1 - 341 + 348 1 - 342 + 347 0 0 - 290 - 322 + 324 + 336 1 - 342 - MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE - MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE - MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE + 348 + MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA + MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA + MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA - - - - 0 - 0 - 29 - 101761 - 0.041 - 0.267 - 0.14 - - - - - 21 - sp|P08100|OPSD_HUMAN - Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 - 348 - - 1 + 3 gi|283855846|gb|ADB45242.1| rhodopsin [Cynopterus brachyotis] ADB45242 @@ -506,27 +168,8 @@ - - - - 0 - 0 - 29 - 101761 - 0.041 - 0.267 - 0.14 - - - - - 22 - sp|P08100|OPSD_HUMAN - Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 - 348 - - 1 + 4 gi|283855823|gb|ADB45229.1| rhodopsin [Myotis pilosus] ADB45229 @@ -553,74 +196,36 @@ - - - - 0 - 0 - 29 - 101761 - 0.041 - 0.267 - 0.14 - - - - - 23 - sp|P08100|OPSD_HUMAN - Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 - 348 - - 1 - gi|223523|prf||0811197A - rhodopsin [Bos taurus] - 0811197A - 347 + 5 + gi|3024260|sp|P56514.1|OPSD_BUFBU + RecName: Full=Rhodopsin + P56514 + 354 1 - 673.315 - 1736 + 619.002 + 1595 0 1 - 348 + 341 1 - 347 + 342 0 0 - 324 - 336 + 290 + 322 1 - 348 - MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA - MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA - MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGID YT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA + 342 + MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE + MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE + MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLYVT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S++GYF+ G TGC +EGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIPEG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQESATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF++QGS FGPIFMT+PAFFAKS++IYNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE - - - - 0 - 0 - 29 - 101761 - 0.041 - 0.267 - 0.14 - - - - - 24 - sp|P08100|OPSD_HUMAN - Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 - 348 - - 1 + 6 gi|12583665|dbj|BAB21486.1| fresh water form rod opsin [Conger myriaster] BAB21486 @@ -652,8 +257,8 @@ 0 0 - 29 - 101761 + 41 + 556591 0.041 0.267 0.14 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_four_human_vs_rhodopsin_converted.tabular --- a/test-data/blastp_four_human_vs_rhodopsin_converted.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_four_human_vs_rhodopsin_converted.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,6 +1,6 @@ -sp|P08100|OPSD_HUMAN gi|57163783|ref|NP_001009242.1| 96.55 348 12 0 1 348 1 348 0.0 701 -sp|P08100|OPSD_HUMAN gi|3024260|sp|P56514.1|OPSD_BUFBU 84.80 342 51 1 1 341 1 342 0.0 619 -sp|P08100|OPSD_HUMAN gi|283855846|gb|ADB45242.1| 94.82 328 17 0 11 338 1 328 0.0 653 -sp|P08100|OPSD_HUMAN gi|283855823|gb|ADB45229.1| 94.82 328 17 0 11 338 1 328 0.0 631 -sp|P08100|OPSD_HUMAN gi|223523|prf||0811197A 93.10 348 23 1 1 348 1 347 0.0 673 -sp|P08100|OPSD_HUMAN gi|12583665|dbj|BAB21486.1| 82.16 342 60 1 1 341 1 342 0.0 599 +P08100 gi|57163783|ref|NP_001009242.1| 96.552 348 12 0 1 348 1 348 0.0 701 +P08100 gi|223523|prf||0811197A 93.103 348 23 1 1 348 1 347 0.0 673 +P08100 gi|283855846|gb|ADB45242.1| 94.817 328 17 0 11 338 1 328 0.0 653 +P08100 gi|283855823|gb|ADB45229.1| 94.817 328 17 0 11 338 1 328 0.0 631 +P08100 gi|3024260|sp|P56514.1|OPSD_BUFBU 84.795 342 51 1 1 341 1 342 0.0 619 +P08100 gi|12583665|dbj|BAB21486.1| 82.164 342 60 1 1 341 1 342 0.0 599 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_four_human_vs_rhodopsin_converted_ext.tabular --- a/test-data/blastp_four_human_vs_rhodopsin_converted_ext.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_four_human_vs_rhodopsin_converted_ext.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,6 +1,6 @@ -sp|P08100|OPSD_HUMAN gi|57163783|ref|NP_001009242.1| 96.55 348 12 0 1 348 1 348 0.0 701 gi|57163783|ref|NP_001009242.1| 1808 336 343 0 98.56 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 348 348 rhodopsin [Felis catus] -sp|P08100|OPSD_HUMAN gi|3024260|sp|P56514.1|OPSD_BUFBU 84.80 342 51 1 1 341 1 342 0.0 619 gi|3024260|sp|P56514.1|OPSD_BUFBU 1595 290 322 1 94.15 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 348 354 RecName: Full=Rhodopsin -sp|P08100|OPSD_HUMAN gi|283855846|gb|ADB45242.1| 94.82 328 17 0 11 338 1 328 0.0 653 gi|283855846|gb|ADB45242.1| 1684 311 321 0 97.87 1 1 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS 348 328 rhodopsin [Cynopterus brachyotis] -sp|P08100|OPSD_HUMAN gi|283855823|gb|ADB45229.1| 94.82 328 17 0 11 338 1 328 0.0 631 gi|283855823|gb|ADB45229.1| 1627 311 323 0 98.48 1 1 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS 348 328 rhodopsin [Myotis pilosus] -sp|P08100|OPSD_HUMAN gi|223523|prf||0811197A 93.10 348 23 1 1 348 1 347 0.0 673 gi|223523|prf||0811197A 1736 324 336 1 96.55 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348 347 rhodopsin [Bos taurus] -sp|P08100|OPSD_HUMAN gi|12583665|dbj|BAB21486.1| 82.16 342 60 1 1 341 1 342 0.0 599 gi|12583665|dbj|BAB21486.1| 1544 281 314 1 91.81 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 348 354 fresh water form rod opsin [Conger myriaster] +P08100 gi|57163783|ref|NP_001009242.1| 96.552 348 12 0 1 348 1 348 0.0 701 gi|57163783|ref|NP_001009242.1| 1808 336 343 0 98.56 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 348 348 rhodopsin [Felis catus] +P08100 gi|223523|prf||0811197A 93.103 348 23 1 1 348 1 347 0.0 673 gi|223523|prf||0811197A 1736 324 336 1 96.55 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348 347 rhodopsin [Bos taurus] +P08100 gi|283855846|gb|ADB45242.1| 94.817 328 17 0 11 338 1 328 0.0 653 gi|283855846|gb|ADB45242.1| 1684 311 321 0 97.87 1 1 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS 348 328 rhodopsin [Cynopterus brachyotis] +P08100 gi|283855823|gb|ADB45229.1| 94.817 328 17 0 11 338 1 328 0.0 631 gi|283855823|gb|ADB45229.1| 1627 311 323 0 98.48 1 1 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS 348 328 rhodopsin [Myotis pilosus] +P08100 gi|3024260|sp|P56514.1|OPSD_BUFBU 84.795 342 51 1 1 341 1 342 0.0 619 gi|3024260|sp|P56514.1|OPSD_BUFBU 1595 290 322 1 94.15 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 348 354 RecName: Full=Rhodopsin +P08100 gi|12583665|dbj|BAB21486.1| 82.164 342 60 1 1 341 1 342 0.0 599 gi|12583665|dbj|BAB21486.1| 1544 281 314 1 91.81 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 348 354 fresh water form rod opsin [Conger myriaster] diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_four_human_vs_rhodopsin_ext.tabular --- a/test-data/blastp_four_human_vs_rhodopsin_ext.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_four_human_vs_rhodopsin_ext.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,6 +1,6 @@ -sp|P08100|OPSD_HUMAN gi|57163783|ref|NP_001009242.1| 96.55 348 12 0 1 348 1 348 0.0 701 gi|57163783|ref|NP_001009242.1| 1808 336 343 0 98.56 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 348 348 N/A -sp|P08100|OPSD_HUMAN gi|3024260|sp|P56514.1|OPSD_BUFBU 84.80 342 51 1 1 341 1 342 0.0 619 gi|3024260|sp|P56514.1|OPSD_BUFBU 1595 290 322 1 94.15 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 348 354 N/A -sp|P08100|OPSD_HUMAN gi|283855846|gb|ADB45242.1| 94.82 328 17 0 11 338 1 328 0.0 653 gi|283855846|gb|ADB45242.1| 1684 311 321 0 97.87 1 1 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS 348 328 N/A -sp|P08100|OPSD_HUMAN gi|283855823|gb|ADB45229.1| 94.82 328 17 0 11 338 1 328 0.0 631 gi|283855823|gb|ADB45229.1| 1627 311 323 0 98.48 1 1 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS 348 328 N/A -sp|P08100|OPSD_HUMAN gi|223523|prf||0811197A 93.10 348 23 1 1 348 1 347 0.0 673 gi|223523|prf||0811197A 1736 324 336 1 96.55 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348 347 N/A -sp|P08100|OPSD_HUMAN gi|12583665|dbj|BAB21486.1| 82.16 342 60 1 1 341 1 342 0.0 599 gi|12583665|dbj|BAB21486.1| 1544 281 314 1 91.81 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 348 354 N/A +P08100 NP_001009242 96.552 348 12 0 1 348 1 348 0.0 701 gi|57163783|ref|NP_001009242.1| 1808 336 343 0 98.56 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 348 348 N/A +P08100 0811197A 93.103 348 23 1 1 348 1 347 0.0 673 gi|223523|prf||0811197A 1736 324 336 1 96.55 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGID-YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348 347 N/A +P08100 ADB45242 94.817 328 17 0 11 338 1 328 0.0 653 gi|283855846|gb|ADB45242.1| 1684 311 321 0 97.87 1 1 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS 348 328 N/A +P08100 ADB45229 94.817 328 17 0 11 338 1 328 0.0 631 gi|283855823|gb|ADB45229.1| 1627 311 323 0 98.48 1 1 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVS VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS 348 328 N/A +P08100 P56514 84.795 342 51 1 1 341 1 342 0.0 619 gi|3024260|sp|P56514.1|OPSD_BUFBU 1595 290 322 1 94.15 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 348 354 N/A +P08100 BAB21486 82.164 342 60 1 1 341 1 342 0.0 599 gi|12583665|dbj|BAB21486.1| 1544 281 314 1 91.81 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 348 354 N/A diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_human_vs_pdb_seg_no_converted_ext.tabular --- a/test-data/blastp_human_vs_pdb_seg_no_converted_ext.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_human_vs_pdb_seg_no_converted_ext.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,8 +1,8 @@ -sp|Q9BS26|ERP44_HUMAN gi|193885198|pdb|2R2J|A 97.11 381 11 0 26 406 2 382 0.0 768 gi|193885198|pdb|2R2J|A 1982 370 372 0 97.64 1 1 PVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL PLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHXYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL 406 382 Chain A, Crystal Structure Of Human Erp44 -sp|Q9BS26|ERP44_HUMAN gi|88192228|pdb|2B5E|A 25.17 290 193 8 25 306 10 283 4e-20 95.1 gi|88192228|pdb|2B5E|A;gi|206581884|pdb|3BOA|A 235 73 133 24 45.86 1 1 TPVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKR-EYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNI---IYKPPGHSAPDMVYLGA---MTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKF-RH APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-----NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA--------ENADDDFKLSIYLPSAMDEP-VVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFY--NDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRH 406 504 Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase<>Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase. -sp|Q9NSY1|BMP2K_HUMAN gi|73536291|pdb|2BUJ|A 29.39 279 182 8 40 308 21 294 1e-22 105 gi|73536291|pdb|2BUJ|A;gi|73536292|pdb|2BUJ|B 262 82 130 15 46.59 1 1 GVRVFAVGRHQVTLEESLAEGGFSTVFLVR-THGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMNKKLQTG--FTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDG-VNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPF------GESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDI GHMVIIDNKHYLFIQK-LGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREAD-MHRLFNHPNILRLVAYCLRERGAKH-EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH--AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHI 1161 317 Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine<>Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine -sp|Q9NSY1|BMP2K_HUMAN gi|270346335|pdb|2WQM|A 27.21 272 166 12 53 311 36 288 6e-17 86.3 gi|270346335|pdb|2WQM|A;gi|270346336|pdb|2WQN|A 212 74 129 32 47.43 1 1 LEESLAEGGFSTVFLVRTH-GGIRCALKRMYVNNMPDLNV---CKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMN--KKLQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPFGESQV---AICD----GNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDIFQV IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN-HPNVIKYY---ASFIEDN--ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLG--LGRFFSSKTTAAHSL------VGTPYYMSPERIHENG---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV 1161 310 Chain A, Structure Of Apo Human Nek7<>Chain A, Structure Of Adp-Bound Human Nek7 -sp|P06213|INSR_HUMAN gi|116667097|pdb|2DTG|E 95.91 928 7 2 28 955 1 897 0.0 1846 gi|116667097|pdb|2DTG|E 4781 890 893 31 96.23 1 1 HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV------------PRPSRKRRSLGDVGNA-------------------GNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA 1382 897 Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's -sp|P06213|INSR_HUMAN gi|114794482|pdb|2HR7|A 99.59 485 2 0 28 512 1 485 0.0 1016 gi|114794482|pdb|2HR7|A;gi|114794483|pdb|2HR7|B 2628 483 485 0 100.00 1 1 HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKI HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDKASCENELLKFSYIRTSFDKI 1382 486 Chain A, Insulin Receptor (Domains 1-3)<>Chain B, Insulin Receptor (Domains 1-3) -sp|P08100|OPSD_HUMAN gi|16975387|pdb|1JFP|A 93.39 348 23 0 1 348 1 348 0.0 681 gi|16975387|pdb|1JFP|A;gi|22219255|pdb|1LN6|A;gi|157878065|pdb|1GZM|A;gi|157878066|pdb|1GZM|B;gi|157878298|pdb|1HZX|A;gi|157878299|pdb|1HZX|B;gi|157878979|pdb|1L9H|A;gi|157878980|pdb|1L9H|B;gi|157880263|pdb|1U19|A;gi|157880264|pdb|1U19|B;gi|157883606|pdb|2G87|A;gi|157883607|pdb|2G87|B;gi|157883830|pdb|2HPY|A;gi|157883831|pdb|2HPY|B;gi|157883860|pdb|2I35|A;gi|157883861|pdb|2I36|A;gi|157883862|pdb|2I36|B;gi|157883863|pdb|2I36|C;gi|157883864|pdb|2I37|A;gi|157883865|pdb|2I37|B;gi|157883866|pdb|2I37|C;gi|159795066|pdb|2PED|A;gi|159795067|pdb|2PED|B;gi|192988480|pdb|3CAP|A;gi|192988481|pdb|3CAP|B;gi|195927457|pdb|3C9L|A;gi|197107530|pdb|1F88|A;gi|197107531|pdb|1F88|B;gi|206582030|pdb|3DQB|A 1756 325 337 0 96.84 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348 348 Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)<>Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)<>Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form<>Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form<>Chain A, Crystal Structure Of Bovine Rhodopsin<>Chain B, Crystal Structure Of Bovine Rhodopsin<>Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution<>Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution<>Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution<>Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution<>Chain A, Crystallographic Model Of Bathorhodopsin<>Chain B, Crystallographic Model Of Bathorhodopsin<>Chain A, Crystallographic Model Of Lumirhodopsin<>Chain B, Crystallographic Model Of Lumirhodopsin<>Chain A, Crystal Structure Of Rhombohedral Crystal Form Of Ground- State Rhodopsin<>Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain A, Crystal Structure Of A Photoactivated Rhodopsin<>Chain B, Crystal Structure Of A Photoactivated Rhodopsin<>Chain C, Crystal Structure Of A Photoactivated Rhodopsin<>Chain A, Crystallographic Model Of 9-Cis-Rhodopsin<>Chain B, Crystallographic Model Of 9-Cis-Rhodopsin<>Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State<>Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State<>Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal Crystal Form<>Chain A, Crystal Structure Of Bovine Rhodopsin<>Chain B, Crystal Structure Of Bovine Rhodopsin<>Chain A, Crystal Structure Of The Active G-Protein-Coupled Receptor Opsin In Complex With A C-Terminal Peptide Derived From The Galpha Subunit Of Transducin -sp|P08100|OPSD_HUMAN gi|195927458|pdb|3C9M|A 93.10 348 24 0 1 348 1 348 0.0 674 gi|195927458|pdb|3C9M|A 1738 324 335 0 96.26 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348 348 Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form +sp|Q9BS26|ERP44_HUMAN gi|193885198|pdb|2R2J|A 97.113 381 11 0 26 406 2 382 0.0 768 gi|193885198|pdb|2R2J|A 1982 370 372 0 97.64 1 1 PVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL PLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHXYVFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL 406 382 Chain A, Crystal Structure Of Human Erp44 +sp|Q9BS26|ERP44_HUMAN gi|88192228|pdb|2B5E|A 25.172 290 193 8 25 306 10 283 4e-20 95.1 gi|88192228|pdb|2B5E|A;gi|206581884|pdb|3BOA|A 235 73 133 24 45.86 1 1 TPVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKR-EYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNI---IYKPPGHSAPDMVYLGA---MTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKF-RH APEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-----NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSA--------ENADDDFKLSIYLPSAMDEP-VVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFY--NDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRH 406 504 Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase<>Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase. +sp|Q9NSY1|BMP2K_HUMAN gi|73536291|pdb|2BUJ|A 29.391 279 182 8 40 308 21 294 1e-22 105 gi|73536291|pdb|2BUJ|A;gi|73536292|pdb|2BUJ|B 262 82 130 15 46.59 1 1 GVRVFAVGRHQVTLEESLAEGGFSTVFLVR-THGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMNKKLQTG--FTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDG-VNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPF------GESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDI GHMVIIDNKHYLFIQK-LGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREAD-MHRLFNHPNILRLVAYCLRERGAKH-EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH--AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHI 1161 317 Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine<>Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine +sp|Q9NSY1|BMP2K_HUMAN gi|270346335|pdb|2WQM|A 27.206 272 166 12 53 311 36 288 6e-17 86.3 gi|270346335|pdb|2WQM|A;gi|270346336|pdb|2WQN|A 212 74 129 32 47.43 1 1 LEESLAEGGFSTVFLVRTH-GGIRCALKRMYVNNMPDLNV---CKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMN--KKLQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPFGESQV---AICD----GNFTIPDNSRYSRNIHCLIRFMLEPDPEHRPDIFQV IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN-HPNVIKYY---ASFIEDN--ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR--VMHRDIKPANVFITATGVVKLGDLG--LGRFFSSKTTAAHSL------VGTPYYMSPERIHENG---YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYV 1161 310 Chain A, Structure Of Apo Human Nek7<>Chain A, Structure Of Adp-Bound Human Nek7 +sp|P06213|INSR_HUMAN gi|116667097|pdb|2DTG|E 95.905 928 7 2 28 955 1 897 0.0 1846 gi|116667097|pdb|2DTG|E 4781 890 893 31 96.23 1 1 HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV------------PRPSRKRRSLGDVGNA-------------------GNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA 1382 897 Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's +sp|P06213|INSR_HUMAN gi|114794482|pdb|2HR7|A 99.588 485 2 0 28 512 1 485 0.0 1016 gi|114794482|pdb|2HR7|A;gi|114794483|pdb|2HR7|B 2628 483 485 0 100.00 1 1 HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKI HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDKASCENELLKFSYIRTSFDKI 1382 486 Chain A, Insulin Receptor (Domains 1-3)<>Chain B, Insulin Receptor (Domains 1-3) +sp|P08100|OPSD_HUMAN gi|16975387|pdb|1JFP|A 93.391 348 23 0 1 348 1 348 0.0 681 gi|16975387|pdb|1JFP|A;gi|22219255|pdb|1LN6|A;gi|157878065|pdb|1GZM|A;gi|157878066|pdb|1GZM|B;gi|157878298|pdb|1HZX|A;gi|157878299|pdb|1HZX|B;gi|157878979|pdb|1L9H|A;gi|157878980|pdb|1L9H|B;gi|157880263|pdb|1U19|A;gi|157880264|pdb|1U19|B;gi|157883606|pdb|2G87|A;gi|157883607|pdb|2G87|B;gi|157883830|pdb|2HPY|A;gi|157883831|pdb|2HPY|B;gi|157883860|pdb|2I35|A;gi|157883861|pdb|2I36|A;gi|157883862|pdb|2I36|B;gi|157883863|pdb|2I36|C;gi|157883864|pdb|2I37|A;gi|157883865|pdb|2I37|B;gi|157883866|pdb|2I37|C;gi|159795066|pdb|2PED|A;gi|159795067|pdb|2PED|B;gi|192988480|pdb|3CAP|A;gi|192988481|pdb|3CAP|B;gi|195927457|pdb|3C9L|A;gi|197107530|pdb|1F88|A;gi|197107531|pdb|1F88|B;gi|206582030|pdb|3DQB|A 1756 325 337 0 96.84 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348 348 Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)<>Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)<>Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form<>Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form<>Chain A, Crystal Structure Of Bovine Rhodopsin<>Chain B, Crystal Structure Of Bovine Rhodopsin<>Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution<>Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution<>Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution<>Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms Resolution<>Chain A, Crystallographic Model Of Bathorhodopsin<>Chain B, Crystallographic Model Of Bathorhodopsin<>Chain A, Crystallographic Model Of Lumirhodopsin<>Chain B, Crystallographic Model Of Lumirhodopsin<>Chain A, Crystal Structure Of Rhombohedral Crystal Form Of Ground- State Rhodopsin<>Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State Rhodopsin<>Chain A, Crystal Structure Of A Photoactivated Rhodopsin<>Chain B, Crystal Structure Of A Photoactivated Rhodopsin<>Chain C, Crystal Structure Of A Photoactivated Rhodopsin<>Chain A, Crystallographic Model Of 9-Cis-Rhodopsin<>Chain B, Crystallographic Model Of 9-Cis-Rhodopsin<>Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State<>Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled Receptor Rhodopsin In Its Ligand-Free State<>Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal Crystal Form<>Chain A, Crystal Structure Of Bovine Rhodopsin<>Chain B, Crystal Structure Of Bovine Rhodopsin<>Chain A, Crystal Structure Of The Active G-Protein-Coupled Receptor Opsin In Complex With A C-Terminal Peptide Derived From The Galpha Subunit Of Transducin +sp|P08100|OPSD_HUMAN gi|195927458|pdb|3C9M|A 93.103 348 24 0 1 348 1 348 0.0 674 gi|195927458|pdb|3C9M|A 1738 324 335 0 96.26 1 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA MCGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 348 348 Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_human_vs_pdb_seg_no_converted_std.tabular --- a/test-data/blastp_human_vs_pdb_seg_no_converted_std.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_human_vs_pdb_seg_no_converted_std.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,8 +1,8 @@ -sp|Q9BS26|ERP44_HUMAN gi|193885198|pdb|2R2J|A 97.11 381 11 0 26 406 2 382 0.0 768 -sp|Q9BS26|ERP44_HUMAN gi|88192228|pdb|2B5E|A 25.17 290 193 8 25 306 10 283 4e-20 95.1 -sp|Q9NSY1|BMP2K_HUMAN gi|73536291|pdb|2BUJ|A 29.39 279 182 8 40 308 21 294 1e-22 105 -sp|Q9NSY1|BMP2K_HUMAN gi|270346335|pdb|2WQM|A 27.21 272 166 12 53 311 36 288 6e-17 86.3 -sp|P06213|INSR_HUMAN gi|116667097|pdb|2DTG|E 95.91 928 7 2 28 955 1 897 0.0 1846 -sp|P06213|INSR_HUMAN gi|114794482|pdb|2HR7|A 99.59 485 2 0 28 512 1 485 0.0 1016 -sp|P08100|OPSD_HUMAN gi|16975387|pdb|1JFP|A 93.39 348 23 0 1 348 1 348 0.0 681 -sp|P08100|OPSD_HUMAN gi|195927458|pdb|3C9M|A 93.10 348 24 0 1 348 1 348 0.0 674 +sp|Q9BS26|ERP44_HUMAN gi|193885198|pdb|2R2J|A 97.113 381 11 0 26 406 2 382 0.0 768 +sp|Q9BS26|ERP44_HUMAN gi|88192228|pdb|2B5E|A 25.172 290 193 8 25 306 10 283 4e-20 95.1 +sp|Q9NSY1|BMP2K_HUMAN gi|73536291|pdb|2BUJ|A 29.391 279 182 8 40 308 21 294 1e-22 105 +sp|Q9NSY1|BMP2K_HUMAN gi|270346335|pdb|2WQM|A 27.206 272 166 12 53 311 36 288 6e-17 86.3 +sp|P06213|INSR_HUMAN gi|116667097|pdb|2DTG|E 95.905 928 7 2 28 955 1 897 0.0 1846 +sp|P06213|INSR_HUMAN gi|114794482|pdb|2HR7|A 99.588 485 2 0 28 512 1 485 0.0 1016 +sp|P08100|OPSD_HUMAN gi|16975387|pdb|1JFP|A 93.391 348 23 0 1 348 1 348 0.0 681 +sp|P08100|OPSD_HUMAN gi|195927458|pdb|3C9M|A 93.103 348 24 0 1 348 1 348 0.0 674 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_rhodopsin_vs_four_human.tabular --- a/test-data/blastp_rhodopsin_vs_four_human.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_rhodopsin_vs_four_human.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,6 +1,6 @@ -gi|57163783|ref|NP_001009242.1| sp|P08100|OPSD_HUMAN 96.55 348 12 0 1 348 1 348 0.0 701 -gi|3024260|sp|P56514.1|OPSD_BUFBU sp|P08100|OPSD_HUMAN 83.33 354 53 2 1 354 1 348 0.0 605 -gi|283855846|gb|ADB45242.1| sp|P08100|OPSD_HUMAN 94.82 328 17 0 1 328 11 338 0.0 630 -gi|283855823|gb|ADB45229.1| sp|P08100|OPSD_HUMAN 94.82 328 17 0 1 328 11 338 0.0 630 -gi|223523|prf||0811197A sp|P08100|OPSD_HUMAN 93.10 348 23 1 1 347 1 348 0.0 651 -gi|12583665|dbj|BAB21486.1| sp|P08100|OPSD_HUMAN 81.09 349 65 1 1 349 1 348 0.0 587 +gi|57163783|ref|NP_001009242.1| sp|P08100|OPSD_HUMAN 96.552 348 12 0 1 348 1 348 0.0 701 +gi|3024260|sp|P56514.1|OPSD_BUFBU sp|P08100|OPSD_HUMAN 83.333 354 53 2 1 354 1 348 0.0 605 +gi|283855846|gb|ADB45242.1| sp|P08100|OPSD_HUMAN 94.817 328 17 0 1 328 11 338 0.0 630 +gi|283855823|gb|ADB45229.1| sp|P08100|OPSD_HUMAN 94.817 328 17 0 1 328 11 338 0.0 630 +gi|223523|prf||0811197A sp|P08100|OPSD_HUMAN 93.103 348 23 1 1 347 1 348 0.0 651 +gi|12583665|dbj|BAB21486.1| sp|P08100|OPSD_HUMAN 81.089 349 65 1 1 349 1 348 0.0 587 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastp_sample_converted.tabular --- a/test-data/blastp_sample_converted.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastp_sample_converted.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,9 +1,9 @@ -Sample gi|119953746|ref|YP_950551.1| 96.90 516 16 0 1 516 27 542 0.0 949 -Sample gi|148986157|ref|ZP_01819143.1| 41.27 252 115 3 49 300 679 897 2e-41 174 -Sample gi|77411259|ref|ZP_00787609.1| 41.00 261 143 2 50 310 655 904 8e-39 165 -Sample gi|76786754|ref|YP_329383.1| 39.46 261 147 2 50 310 655 904 7e-37 159 -Sample gi|153811333|ref|ZP_01964001.1| 29.98 557 277 18 3 516 573 1059 2e-36 157 -Sample gi|56962696|ref|YP_174422.1| 28.79 389 228 8 48 433 123 465 3e-33 146 -Sample gi|50914476|ref|YP_060448.1| 43.82 178 100 0 50 227 655 832 5e-33 146 -Sample gi|29374987|ref|NP_814140.1| 25.46 432 244 8 73 482 545 920 7e-31 139 -Sample gi|163941333|ref|YP_001646217.1| 27.19 434 287 7 61 480 142 560 8e-31 138 +Sample gi|119953746|ref|YP_950551.1| 96.899 516 16 0 1 516 27 542 0.0 949 +Sample gi|148986157|ref|ZP_01819143.1| 41.270 252 115 3 49 300 679 897 2e-41 174 +Sample gi|77411259|ref|ZP_00787609.1| 40.996 261 143 2 50 310 655 904 8e-39 165 +Sample gi|76786754|ref|YP_329383.1| 39.464 261 147 2 50 310 655 904 7e-37 159 +Sample gi|153811333|ref|ZP_01964001.1| 29.982 557 277 18 3 516 573 1059 2e-36 157 +Sample gi|56962696|ref|YP_174422.1| 28.792 389 228 8 48 433 123 465 3e-33 146 +Sample gi|50914476|ref|YP_060448.1| 43.820 178 100 0 50 227 655 832 5e-33 146 +Sample gi|29374987|ref|NP_814140.1| 25.463 432 244 8 73 482 545 920 7e-31 139 +Sample gi|163941333|ref|YP_001646217.1| 27.189 434 287 7 61 480 142 560 8e-31 138 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastx_rhodopsin_vs_four_human.tabular --- a/test-data/blastx_rhodopsin_vs_four_human.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastx_rhodopsin_vs_four_human.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,10 +1,10 @@ -gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.55 348 12 0 1 1044 1 348 0.0 639 -gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.24 332 49 0 42 1037 1 332 0.0 551 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.40 111 4 0 1 333 11 121 3e-67 220 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.31 65 5 0 3174 3368 248 312 2e-35 127 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.53 59 5 0 2855 3031 177 235 2e-33 121 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.22 59 4 0 1404 1580 119 177 1e-25 97.1 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.46 26 3 0 4222 4299 312 337 1e-12 57.0 -gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.09 326 16 0 1 978 11 336 0.0 589 -gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.39 348 23 0 1 1044 1 348 0.0 619 -gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.68 333 61 0 23 1021 1 333 0.0 532 +gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.552 348 12 0 1 1044 1 348 0.0 639 +gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.241 332 49 0 42 1037 1 332 0.0 551 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.396 111 4 0 1 333 11 121 3.78e-67 220 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.308 65 5 0 3174 3368 248 312 4.13e-35 127 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.525 59 5 0 2855 3031 177 235 3.99e-33 121 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.220 59 4 0 1404 1580 119 177 7.46e-25 97.1 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.462 26 3 0 4222 4299 312 337 1.13e-11 57.0 +gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.092 326 16 0 1 978 11 336 0.0 589 +gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.391 348 23 0 1 1044 1 348 0.0 619 +gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.682 333 61 0 23 1021 1 333 0.0 532 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastx_rhodopsin_vs_four_human.xml --- a/test-data/blastx_rhodopsin_vs_four_human.xml Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastx_rhodopsin_vs_four_human.xml Wed Apr 19 05:27:19 2017 -0400 @@ -2,7 +2,7 @@ blastx - BLASTX 2.2.31+ + BLASTX 2.5.0+ Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query_1 @@ -24,69 +24,9 @@ gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA 1047 - - - - 0 - 0 - 30 - 119944 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 2 - Query_1 - gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA - 1047 - - - - - 0 - 0 - 30 - 119944 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 3 - Query_1 - gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA - 1047 - - - - - 0 - 0 - 30 - 119944 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 4 - Query_1 - gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA - 1047 - 1 - Subject_4 + sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 Subject_4 348 @@ -117,8 +57,8 @@ 0 0 - 30 - 119944 + 45 + 947568 0.041 0.267 0.14 @@ -126,74 +66,14 @@ - 5 - Query_2 - gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds - 1574 - - - - - 0 - 0 - 33 - 183143 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 6 - Query_2 - gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds - 1574 - - - - - 0 - 0 - 33 - 183143 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 7 - Query_2 - gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds - 1574 - - - - - 0 - 0 - 33 - 183143 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 8 + 2 Query_2 gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds 1574 1 - Subject_4 + sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 Subject_4 348 @@ -224,8 +104,8 @@ 0 0 - 33 - 183143 + 48 + 1477980 0.041 0.267 0.14 @@ -233,74 +113,14 @@ - 9 - Query_3 - gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds - 4301 - - - - - 0 - 0 - 40 - 509838 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 10 - Query_3 - gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds - 4301 - - - - - 0 - 0 - 40 - 509838 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 11 - Query_3 - gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds - 4301 - - - - - 0 - 0 - 40 - 509838 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 12 + 3 Query_3 gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds 4301 1 - Subject_4 + sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 Subject_4 348 @@ -309,7 +129,7 @@ 1 220.705 561 - 3.21377e-67 + 3.78353e-67 1 333 11 @@ -328,7 +148,7 @@ 2 127.487 319 - 1.95079e-35 + 4.12812e-35 3174 3368 248 @@ -347,7 +167,7 @@ 3 121.709 304 - 1.62516e-33 + 3.99023e-33 2855 3031 177 @@ -366,7 +186,7 @@ 4 97.0561 240 - 1.16473e-25 + 7.46148e-25 1404 1580 119 @@ -385,7 +205,7 @@ 5 56.9954 136 - 1.23645e-12 + 1.12842e-11 4222 4299 312 @@ -407,8 +227,8 @@ 0 0 - 40 - 509838 + 55 + 4240106 0.041 0.267 0.14 @@ -416,74 +236,14 @@ - 13 - Query_4 - gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds - 983 - - - - - 0 - 0 - 29 - 112346 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 14 - Query_4 - gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds - 983 - - - - - 0 - 0 - 29 - 112346 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 15 - Query_4 - gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds - 983 - - - - - 0 - 0 - 29 - 112346 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 16 + 4 Query_4 gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds 983 1 - Subject_4 + sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 Subject_4 348 @@ -514,8 +274,8 @@ 0 0 - 29 - 112346 + 44 + 883243 0.041 0.267 0.14 @@ -523,74 +283,14 @@ - 17 - Query_5 - gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds - 1047 - - - - - 0 - 0 - 30 - 119944 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 18 - Query_5 - gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds - 1047 - - - - - 0 - 0 - 30 - 119944 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 19 - Query_5 - gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds - 1047 - - - - - 0 - 0 - 30 - 119944 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 20 + 5 Query_5 gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds 1047 1 - Subject_4 + sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 Subject_4 348 @@ -621,8 +321,8 @@ 0 0 - 30 - 119944 + 45 + 947568 0.041 0.267 0.14 @@ -630,74 +330,14 @@ - 21 - Query_6 - gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds - 1344 - - - - - 0 - 0 - 32 - 155584 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 22 - Query_6 - gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds - 1344 - - - - - 0 - 0 - 32 - 155584 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 23 - Query_6 - gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds - 1344 - - - - - 0 - 0 - 32 - 155584 - 0.041 - 0.267 - 0.14 - - - No hits found - - - 24 + 6 Query_6 gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds 1344 1 - Subject_4 + sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 Subject_4 348 @@ -728,8 +368,8 @@ 0 0 - 32 - 155584 + 47 + 1246709 0.041 0.267 0.14 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastx_rhodopsin_vs_four_human_all.tabular --- a/test-data/blastx_rhodopsin_vs_four_human_all.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastx_rhodopsin_vs_four_human_all.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,10 +1,10 @@ -gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.55 348 12 0 1 1044 1 348 0.0 639 sp|P08100|OPSD_HUMAN 1647 336 343 0 98.56 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 N/A 0 gi|57163782|ref|NM_001009242.1| gi|57163782|ref|NM_001009242.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 15KA71FL4TS79VA9ML34VI71LI7SASA21LI13TA1GV11 99 33 N/A N/A N/A N/A N/A -gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.24 332 49 0 42 1037 1 332 0.0 551 sp|P08100|OPSD_HUMAN 1419 283 315 0 94.88 3 0 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE 1574 348 N/A 0 gi|2734705|gb|U59921.1|BBU59921 gi|2734705|gb|U59921.1|BBU59921 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 3/0 10IV1MF2KA20YF1IM1CA7LV7ML5IV17FV1NDHL4CG3VS1ML1ST1MLNH3IVLF1AP3YNVL36SG4VI7IV3SA2VA3LA9ML5VI26LM8RQ2CF30VIFA13FY2STNH3EN7VI7SASA9LM8IL2LI6FL1ED1DE 63 21 N/A N/A N/A N/A N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.40 111 4 0 1 333 11 121 3e-67 220 sp|P08100|OPSD_HUMAN 561 107 109 0 98.20 1 0 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 5KA9HY61FL4TS28 22 3 N/A N/A N/A N/A N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.31 65 5 0 3174 3368 248 312 2e-35 127 sp|P08100|OPSD_HUMAN 319 60 64 0 98.46 3 0 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 3/0 18LV3GS19LI7SASA13 22 2 N/A N/A N/A N/A N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.53 59 5 0 2855 3031 177 235 2e-33 121 sp|P08100|OPSD_HUMAN 304 54 57 0 96.61 2 0 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 2/0 6ML34VI14VARASA 22 1 N/A N/A N/A N/A N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.22 59 4 0 1404 1580 119 177 1e-25 97.1 sp|P08100|OPSD_HUMAN 240 55 56 0 94.92 3 0 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 3/0 1AG36LV1LF13VA4 22 1 N/A N/A N/A N/A N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.46 26 3 0 4222 4299 312 337 1e-12 57.0 sp|P08100|OPSD_HUMAN 136 23 24 0 92.31 1 0 QFRNCMLTTLCCGKNPLGDDEASTTA QFRNCMLTTICCGKNPLGDDEASATV 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 9LI13TA1AV 22 1 N/A N/A N/A N/A N/A -gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.09 326 16 0 1 978 11 336 0.0 589 sp|P08100|OPSD_HUMAN 1518 310 322 0 98.77 1 0 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT 983 348 N/A 0 gi|283855822|gb|GQ290312.1| gi|283855822|gb|GQ290312.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 5KA66ND4FL4TS5ML7AP49LV25ML34VI40VI6LV19VI11SASA21LI13TA1 99 33 N/A N/A N/A N/A N/A -gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.39 348 23 0 1 1044 1 348 0.0 619 sp|P08100|OPSD_HUMAN 1596 325 337 0 96.84 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 N/A 0 gi|18148870|dbj|AB062417.1| gi|18148870|dbj|AB062417.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 15KA9AY22MV38FL4TS79VA9ML10PLHKEP1TV14IT2LM1VI47LV3GS11DN14TSSA1VI17VL2LI13TA13 99 33 N/A N/A N/A N/A N/A -gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.68 333 61 0 23 1021 1 333 0.0 532 sp|P08100|OPSD_HUMAN 1371 272 307 0 92.19 2 0 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA 1344 348 N/A 0 gi|12583664|dbj|AB043817.1| gi|12583664|dbj|AB043817.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 2/0 10IV1MF22AQ2AM1SA4FL2IVAL12IVEQ23FL4TS1ML3ML12IL14CS8WYMV5VMTS6SN6MAVF2TV6LA3FA20RLAK1GEIV10TVCV2ST2LMAIVI1SF4RQ2CF12EA3RK2RK6VI4SA2VI9WF8TN9SA5SA1LI3MV3CM6HN2IL2LI6FLEGEDEDDEGA 74 25 N/A N/A N/A N/A N/A +gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.552 348 12 0 1 1044 1 348 0.0 639 sp|P08100|OPSD_HUMAN 1647 336 343 0 98.56 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 N/A 0 gi|57163782|ref|NM_001009242.1| gi|57163782|ref|NM_001009242.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 15KA71FL4TS79VA9ML34VI71LI7SASA21LI13TA1GV11 99 33 N/A N/A N/A N/A N/A +gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.241 332 49 0 42 1037 1 332 0.0 551 sp|P08100|OPSD_HUMAN 1419 283 315 0 94.88 3 0 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE 1574 348 N/A 0 gi|2734705|gb|U59921.1|BBU59921 gi|2734705|gb|U59921.1|BBU59921 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 3/0 10IV1MF2KA20YF1IM1CA7LV7ML5IV17FV1NDHL4CG3VS1ML1ST1MLNH3IVLF1AP3YNVL36SG4VI7IV3SA2VA3LA9ML5VI26LM8RQ2CF30VIFA13FY2STNH3EN7VI7SASA9LM8IL2LI6FL1ED1DE 63 21 N/A N/A N/A N/A N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.396 111 4 0 1 333 11 121 3.78e-67 220 sp|P08100|OPSD_HUMAN 561 107 109 0 98.20 1 0 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 5KA9HY61FL4TS28 22 3 N/A N/A N/A N/A N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.308 65 5 0 3174 3368 248 312 4.13e-35 127 sp|P08100|OPSD_HUMAN 319 60 64 0 98.46 3 0 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 3/0 18LV3GS19LI7SASA13 22 2 N/A N/A N/A N/A N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.525 59 5 0 2855 3031 177 235 3.99e-33 121 sp|P08100|OPSD_HUMAN 304 54 57 0 96.61 2 0 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 2/0 6ML34VI14VARASA 22 1 N/A N/A N/A N/A N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.220 59 4 0 1404 1580 119 177 7.46e-25 97.1 sp|P08100|OPSD_HUMAN 240 55 56 0 94.92 3 0 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 3/0 1AG36LV1LF13VA4 22 1 N/A N/A N/A N/A N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.462 26 3 0 4222 4299 312 337 1.13e-11 57.0 sp|P08100|OPSD_HUMAN 136 23 24 0 92.31 1 0 QFRNCMLTTLCCGKNPLGDDEASTTA QFRNCMLTTICCGKNPLGDDEASATV 4301 348 N/A 0 gi|283855845|gb|GQ290303.1| gi|283855845|gb|GQ290303.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 9LI13TA1AV 22 1 N/A N/A N/A N/A N/A +gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.092 326 16 0 1 978 11 336 0.0 589 sp|P08100|OPSD_HUMAN 1518 310 322 0 98.77 1 0 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT 983 348 N/A 0 gi|283855822|gb|GQ290312.1| gi|283855822|gb|GQ290312.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 5KA66ND4FL4TS5ML7AP49LV25ML34VI40VI6LV19VI11SASA21LI13TA1 99 33 N/A N/A N/A N/A N/A +gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.391 348 23 0 1 1044 1 348 0.0 619 sp|P08100|OPSD_HUMAN 1596 325 337 0 96.84 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 N/A 0 gi|18148870|dbj|AB062417.1| gi|18148870|dbj|AB062417.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 1/0 15KA9AY22MV38FL4TS79VA9ML10PLHKEP1TV14IT2LM1VI47LV3GS11DN14TSSA1VI17VL2LI13TA13 99 33 N/A N/A N/A N/A N/A +gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.682 333 61 0 23 1021 1 333 0.0 532 sp|P08100|OPSD_HUMAN 1371 272 307 0 92.19 2 0 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA 1344 348 N/A 0 gi|12583664|dbj|AB043817.1| gi|12583664|dbj|AB043817.1| 0 0 sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN sp|P08100|OPSD_HUMAN N/A N/A 2/0 10IV1MF22AQ2AM1SA4FL2IVAL12IVEQ23FL4TS1ML3ML12IL14CS8WYMV5VMTS6SN6MAVF2TV6LA3FA20RLAK1GEIV10TVCV2ST2LMAIVI1SF4RQ2CF12EA3RK2RK6VI4SA2VI9WF8TN9SA5SA1LI3MV3CM6HN2IL2LI6FLEGEDEDDEGA 74 25 N/A N/A N/A N/A N/A diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastx_rhodopsin_vs_four_human_converted.tabular --- a/test-data/blastx_rhodopsin_vs_four_human_converted.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastx_rhodopsin_vs_four_human_converted.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,10 +1,10 @@ -gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.55 348 12 0 1 1044 1 348 0.0 639 -gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.24 332 49 0 42 1037 1 332 0.0 551 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.40 111 4 0 1 333 11 121 3e-67 220 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.31 65 5 0 3174 3368 248 312 2e-35 127 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.53 59 5 0 2855 3031 177 235 2e-33 121 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.22 59 4 0 1404 1580 119 177 1e-25 97.1 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.46 26 3 0 4222 4299 312 337 1e-12 57.0 -gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.09 326 16 0 1 978 11 336 0.0 589 -gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.39 348 23 0 1 1044 1 348 0.0 619 -gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.68 333 61 0 23 1021 1 333 0.0 532 +gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.552 348 12 0 1 1044 1 348 0.0 639 +gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.241 332 49 0 42 1037 1 332 0.0 551 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.396 111 4 0 1 333 11 121 4e-67 220 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.308 65 5 0 3174 3368 248 312 4e-35 127 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.525 59 5 0 2855 3031 177 235 4e-33 121 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.220 59 4 0 1404 1580 119 177 7e-25 97.1 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.462 26 3 0 4222 4299 312 337 1e-11 57.0 +gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.092 326 16 0 1 978 11 336 0.0 589 +gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.391 348 23 0 1 1044 1 348 0.0 619 +gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.682 333 61 0 23 1021 1 333 0.0 532 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastx_rhodopsin_vs_four_human_converted_ext.tabular --- a/test-data/blastx_rhodopsin_vs_four_human_converted_ext.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastx_rhodopsin_vs_four_human_converted_ext.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,10 +1,10 @@ -gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.55 348 12 0 1 1044 1 348 0.0 639 sp|P08100|OPSD_HUMAN 1647 336 343 0 98.56 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.24 332 49 0 42 1037 1 332 0.0 551 sp|P08100|OPSD_HUMAN 1419 283 315 0 94.88 3 0 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE 1574 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.40 111 4 0 1 333 11 121 3e-67 220 sp|P08100|OPSD_HUMAN 561 107 109 0 98.20 1 0 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 4301 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.31 65 5 0 3174 3368 248 312 2e-35 127 sp|P08100|OPSD_HUMAN 319 60 64 0 98.46 3 0 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ 4301 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.53 59 5 0 2855 3031 177 235 2e-33 121 sp|P08100|OPSD_HUMAN 304 54 57 0 96.61 2 0 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 4301 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.22 59 4 0 1404 1580 119 177 1e-25 97.1 sp|P08100|OPSD_HUMAN 240 55 56 0 94.92 3 0 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 4301 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.46 26 3 0 4222 4299 312 337 1e-12 57.0 sp|P08100|OPSD_HUMAN 136 23 24 0 92.31 1 0 QFRNCMLTTLCCGKNPLGDDEASTTA QFRNCMLTTICCGKNPLGDDEASATV 4301 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.09 326 16 0 1 978 11 336 0.0 589 sp|P08100|OPSD_HUMAN 1518 310 322 0 98.77 1 0 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT 983 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.39 348 23 0 1 1044 1 348 0.0 619 sp|P08100|OPSD_HUMAN 1596 325 337 0 96.84 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 -gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.68 333 61 0 23 1021 1 333 0.0 532 sp|P08100|OPSD_HUMAN 1371 272 307 0 92.19 2 0 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA 1344 348 Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.552 348 12 0 1 1044 1 348 0.0 639 sp|P08100|OPSD_HUMAN 1647 336 343 0 98.56 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.241 332 49 0 42 1037 1 332 0.0 551 sp|P08100|OPSD_HUMAN 1419 283 315 0 94.88 3 0 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE 1574 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.396 111 4 0 1 333 11 121 4e-67 220 sp|P08100|OPSD_HUMAN 561 107 109 0 98.20 1 0 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 4301 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.308 65 5 0 3174 3368 248 312 4e-35 127 sp|P08100|OPSD_HUMAN 319 60 64 0 98.46 3 0 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ 4301 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.525 59 5 0 2855 3031 177 235 4e-33 121 sp|P08100|OPSD_HUMAN 304 54 57 0 96.61 2 0 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 4301 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.220 59 4 0 1404 1580 119 177 7e-25 97.1 sp|P08100|OPSD_HUMAN 240 55 56 0 94.92 3 0 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 4301 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.462 26 3 0 4222 4299 312 337 1e-11 57.0 sp|P08100|OPSD_HUMAN 136 23 24 0 92.31 1 0 QFRNCMLTTLCCGKNPLGDDEASTTA QFRNCMLTTICCGKNPLGDDEASATV 4301 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.092 326 16 0 1 978 11 336 0.0 589 sp|P08100|OPSD_HUMAN 1518 310 322 0 98.77 1 0 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT 983 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.391 348 23 0 1 1044 1 348 0.0 619 sp|P08100|OPSD_HUMAN 1596 325 337 0 96.84 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVXXXXXXXXXXXXXXXXXKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 +gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.682 333 61 0 23 1021 1 333 0.0 532 sp|P08100|OPSD_HUMAN 1371 272 307 0 92.19 2 0 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKXXXXXXXXXXXXXXXXXXVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA 1344 348 sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastx_rhodopsin_vs_four_human_ext.tabular --- a/test-data/blastx_rhodopsin_vs_four_human_ext.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastx_rhodopsin_vs_four_human_ext.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,10 +1,10 @@ -gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.55 348 12 0 1 1044 1 348 0.0 639 sp|P08100|OPSD_HUMAN 1647 336 343 0 98.56 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 N/A -gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.24 332 49 0 42 1037 1 332 0.0 551 sp|P08100|OPSD_HUMAN 1419 283 315 0 94.88 3 0 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE 1574 348 N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.40 111 4 0 1 333 11 121 3e-67 220 sp|P08100|OPSD_HUMAN 561 107 109 0 98.20 1 0 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 4301 348 N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.31 65 5 0 3174 3368 248 312 2e-35 127 sp|P08100|OPSD_HUMAN 319 60 64 0 98.46 3 0 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ 4301 348 N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.53 59 5 0 2855 3031 177 235 2e-33 121 sp|P08100|OPSD_HUMAN 304 54 57 0 96.61 2 0 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 4301 348 N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.22 59 4 0 1404 1580 119 177 1e-25 97.1 sp|P08100|OPSD_HUMAN 240 55 56 0 94.92 3 0 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 4301 348 N/A -gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.46 26 3 0 4222 4299 312 337 1e-12 57.0 sp|P08100|OPSD_HUMAN 136 23 24 0 92.31 1 0 QFRNCMLTTLCCGKNPLGDDEASTTA QFRNCMLTTICCGKNPLGDDEASATV 4301 348 N/A -gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.09 326 16 0 1 978 11 336 0.0 589 sp|P08100|OPSD_HUMAN 1518 310 322 0 98.77 1 0 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT 983 348 N/A -gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.39 348 23 0 1 1044 1 348 0.0 619 sp|P08100|OPSD_HUMAN 1596 325 337 0 96.84 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 N/A -gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.68 333 61 0 23 1021 1 333 0.0 532 sp|P08100|OPSD_HUMAN 1371 272 307 0 92.19 2 0 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA 1344 348 N/A +gi|57163782|ref|NM_001009242.1| sp|P08100|OPSD_HUMAN 96.552 348 12 0 1 1044 1 348 0.0 639 sp|P08100|OPSD_HUMAN 1647 336 343 0 98.56 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 N/A +gi|2734705|gb|U59921.1|BBU59921 sp|P08100|OPSD_HUMAN 85.241 332 49 0 42 1037 1 332 0.0 551 sp|P08100|OPSD_HUMAN 1419 283 315 0 94.88 3 0 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE 1574 348 N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 96.396 111 4 0 1 333 11 121 3.78e-67 220 sp|P08100|OPSD_HUMAN 561 107 109 0 98.20 1 0 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 4301 348 N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 92.308 65 5 0 3174 3368 248 312 4.13e-35 127 sp|P08100|OPSD_HUMAN 319 60 64 0 98.46 3 0 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ 4301 348 N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 91.525 59 5 0 2855 3031 177 235 3.99e-33 121 sp|P08100|OPSD_HUMAN 304 54 57 0 96.61 2 0 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 4301 348 N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 93.220 59 4 0 1404 1580 119 177 7.46e-25 97.1 sp|P08100|OPSD_HUMAN 240 55 56 0 94.92 3 0 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 4301 348 N/A +gi|283855845|gb|GQ290303.1| sp|P08100|OPSD_HUMAN 88.462 26 3 0 4222 4299 312 337 1.13e-11 57.0 sp|P08100|OPSD_HUMAN 136 23 24 0 92.31 1 0 QFRNCMLTTLCCGKNPLGDDEASTTA QFRNCMLTTICCGKNPLGDDEASATV 4301 348 N/A +gi|283855822|gb|GQ290312.1| sp|P08100|OPSD_HUMAN 95.092 326 16 0 1 978 11 336 0.0 589 sp|P08100|OPSD_HUMAN 1518 310 322 0 98.77 1 0 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT 983 348 N/A +gi|18148870|dbj|AB062417.1| sp|P08100|OPSD_HUMAN 93.391 348 23 0 1 1044 1 348 0.0 619 sp|P08100|OPSD_HUMAN 1596 325 337 0 96.84 1 0 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 1047 348 N/A +gi|12583664|dbj|AB043817.1| sp|P08100|OPSD_HUMAN 81.682 333 61 0 23 1021 1 333 0.0 532 sp|P08100|OPSD_HUMAN 1371 272 307 0 92.19 2 0 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA 1344 348 N/A diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/blastx_sample_converted.tabular --- a/test-data/blastx_sample_converted.tabular Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/blastx_sample_converted.tabular Wed Apr 19 05:27:19 2017 -0400 @@ -1,33 +1,33 @@ -phage_suis gi|119953746|ref|YP_950551.1| 100.00 518 0 0 336 1889 25 542 0.0 988 -phage_suis gi|289551554|ref|YP_003472458.1| 32.95 516 280 6 342 1889 657 1106 6e-66 256 -phage_suis gi|223044325|ref|ZP_03614360.1| 30.22 546 327 7 393 1889 655 1193 1e-64 252 -phage_suis gi|223044325|ref|ZP_03614360.1| 19.88 508 328 9 384 1796 844 1309 6e-28 130 -phage_suis gi|268611153|ref|ZP_06144880.1| 28.64 639 371 11 78 1847 440 1042 1e-60 239 -phage_suis gi|268611153|ref|ZP_06144880.1| 23.36 441 286 7 543 1856 547 938 4e-31 141 -phage_suis gi|268611153|ref|ZP_06144880.1| 25.27 459 266 11 522 1844 722 1121 8e-31 140 -phage_suis gi|268611153|ref|ZP_06144880.1| 24.63 406 267 8 501 1694 770 1144 3e-23 115 -phage_suis gi|268611153|ref|ZP_06144880.1| 27.80 241 145 3 492 1148 811 1044 6e-16 90.9 -phage_suis gi|268611153|ref|ZP_06144880.1| 19.76 253 168 6 1158 1883 547 775 3e-04 52.0 -phage_suis gi|268610688|ref|ZP_06144415.1| 28.95 639 369 11 78 1847 440 1042 3e-59 234 -phage_suis gi|268610688|ref|ZP_06144415.1| 24.64 491 316 9 501 1856 770 1245 4e-39 167 -phage_suis gi|268610688|ref|ZP_06144415.1| 23.79 517 319 9 492 1832 811 1322 3e-37 161 -phage_suis gi|268610688|ref|ZP_06144415.1| 21.91 493 322 11 510 1859 905 1377 1e-25 123 -phage_suis gi|268610688|ref|ZP_06144415.1| 20.55 292 197 5 486 1343 1138 1400 4e-10 71.6 -phage_suis gi|268610688|ref|ZP_06144415.1| 21.41 341 225 10 894 1883 467 775 8e-05 53.9 -phage_suis gi|153811333|ref|ZP_01964001.1| 28.34 621 364 16 108 1847 493 1073 8e-55 219 -phage_suis gi|153811333|ref|ZP_01964001.1| 29.67 428 250 9 519 1760 709 1099 2e-47 195 -phage_suis gi|153811333|ref|ZP_01964001.1| 29.41 391 226 7 498 1640 746 1096 1e-39 169 -phage_suis gi|153811333|ref|ZP_01964001.1| 26.49 268 174 3 492 1256 854 1111 3e-24 118 -phage_suis gi|153811333|ref|ZP_01964001.1| 27.12 306 198 4 510 1385 816 1110 1e-23 116 -phage_suis gi|262113750|emb|CAR95417.1| 38.46 286 169 1 384 1241 540 818 2e-54 218 -phage_suis gi|262113750|emb|CAR95417.1| 29.68 411 271 7 657 1871 460 858 3e-40 171 -phage_suis gi|77411259|ref|ZP_00787609.1| 37.19 285 172 1 387 1241 628 905 2e-53 215 -phage_suis gi|77411259|ref|ZP_00787609.1| 28.01 407 281 6 660 1871 548 945 1e-40 172 -phage_suis gi|77411259|ref|ZP_00787609.1| 22.82 355 207 7 978 1877 540 882 9e-14 83.6 -phage_suis gi|76786754|ref|YP_329383.1| 36.84 285 173 1 387 1241 628 905 8e-53 213 -phage_suis gi|76786754|ref|YP_329383.1| 27.27 407 284 6 660 1871 548 945 3e-38 164 -phage_suis gi|76786754|ref|YP_329383.1| 24.73 283 194 2 543 1391 637 900 3e-23 115 -phage_suis gi|76786754|ref|YP_329383.1| 22.91 323 204 6 978 1847 540 850 2e-13 82.4 -phage_suis gi|50914476|ref|YP_060448.1| 35.86 290 179 1 372 1241 623 905 4e-51 207 -phage_suis gi|50914476|ref|YP_060448.1| 27.01 411 280 7 660 1871 548 945 2e-35 155 -phage_suis gi|50914476|ref|YP_060448.1| 23.00 387 269 5 543 1673 637 1004 3e-25 121 +phage_suis gi|119953746|ref|YP_950551.1| 100.000 518 0 0 336 1889 25 542 0.0 988 +phage_suis gi|289551554|ref|YP_003472458.1| 32.946 516 280 6 342 1889 657 1106 6e-66 256 +phage_suis gi|223044325|ref|ZP_03614360.1| 30.220 546 327 7 393 1889 655 1193 1e-64 252 +phage_suis gi|223044325|ref|ZP_03614360.1| 19.882 508 328 9 384 1796 844 1309 6e-28 130 +phage_suis gi|268611153|ref|ZP_06144880.1| 28.638 639 371 11 78 1847 440 1042 1e-60 239 +phage_suis gi|268611153|ref|ZP_06144880.1| 23.356 441 286 7 543 1856 547 938 4e-31 141 +phage_suis gi|268611153|ref|ZP_06144880.1| 25.272 459 266 11 522 1844 722 1121 8e-31 140 +phage_suis gi|268611153|ref|ZP_06144880.1| 24.631 406 267 8 501 1694 770 1144 3e-23 115 +phage_suis gi|268611153|ref|ZP_06144880.1| 27.801 241 145 3 492 1148 811 1044 6e-16 90.9 +phage_suis gi|268611153|ref|ZP_06144880.1| 19.763 253 168 6 1158 1883 547 775 3e-04 52.0 +phage_suis gi|268610688|ref|ZP_06144415.1| 28.951 639 369 11 78 1847 440 1042 3e-59 234 +phage_suis gi|268610688|ref|ZP_06144415.1| 24.644 491 316 9 501 1856 770 1245 4e-39 167 +phage_suis gi|268610688|ref|ZP_06144415.1| 23.791 517 319 9 492 1832 811 1322 3e-37 161 +phage_suis gi|268610688|ref|ZP_06144415.1| 21.907 493 322 11 510 1859 905 1377 1e-25 123 +phage_suis gi|268610688|ref|ZP_06144415.1| 20.548 292 197 5 486 1343 1138 1400 4e-10 71.6 +phage_suis gi|268610688|ref|ZP_06144415.1| 21.408 341 225 10 894 1883 467 775 8e-05 53.9 +phage_suis gi|153811333|ref|ZP_01964001.1| 28.341 621 364 16 108 1847 493 1073 8e-55 219 +phage_suis gi|153811333|ref|ZP_01964001.1| 29.673 428 250 9 519 1760 709 1099 2e-47 195 +phage_suis gi|153811333|ref|ZP_01964001.1| 29.412 391 226 7 498 1640 746 1096 1e-39 169 +phage_suis gi|153811333|ref|ZP_01964001.1| 26.493 268 174 3 492 1256 854 1111 3e-24 118 +phage_suis gi|153811333|ref|ZP_01964001.1| 27.124 306 198 4 510 1385 816 1110 1e-23 116 +phage_suis gi|262113750|emb|CAR95417.1| 38.462 286 169 1 384 1241 540 818 2e-54 218 +phage_suis gi|262113750|emb|CAR95417.1| 29.684 411 271 7 657 1871 460 858 3e-40 171 +phage_suis gi|77411259|ref|ZP_00787609.1| 37.193 285 172 1 387 1241 628 905 2e-53 215 +phage_suis gi|77411259|ref|ZP_00787609.1| 28.010 407 281 6 660 1871 548 945 1e-40 172 +phage_suis gi|77411259|ref|ZP_00787609.1| 22.817 355 207 7 978 1877 540 882 9e-14 83.6 +phage_suis gi|76786754|ref|YP_329383.1| 36.842 285 173 1 387 1241 628 905 8e-53 213 +phage_suis gi|76786754|ref|YP_329383.1| 27.273 407 284 6 660 1871 548 945 3e-38 164 +phage_suis gi|76786754|ref|YP_329383.1| 24.735 283 194 2 543 1391 637 900 3e-23 115 +phage_suis gi|76786754|ref|YP_329383.1| 22.910 323 204 6 978 1847 540 850 2e-13 82.4 +phage_suis gi|50914476|ref|YP_060448.1| 35.862 290 179 1 372 1241 623 905 4e-51 207 +phage_suis gi|50914476|ref|YP_060448.1| 27.007 411 280 7 660 1871 548 945 2e-35 155 +phage_suis gi|50914476|ref|YP_060448.1| 22.997 387 269 5 543 1673 637 1004 3e-25 121 diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/cd00003_and_cd00008.pin Binary file test-data/cd00003_and_cd00008.pin has changed diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/four_human_proteins.dbinfo.txt --- a/test-data/four_human_proteins.dbinfo.txt Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/four_human_proteins.dbinfo.txt Wed Apr 19 05:27:19 2017 -0400 @@ -1,7 +1,7 @@ Database: Just 4 human proteins 4 sequences; 3,297 total residues -Date: Jul 4, 2015 3:35 PM Longest sequence: 1,382 residues +Date: Dec 2, 2016 10:38 AM Longest sequence: 1,382 residues Volumes: - /mnt/galaxy/repositories/galaxy_blast/test-data/four_human_proteins_taxid.fasta + /mnt/shared/users/pc40583/repositories/galaxy_blast/test-data/four_human_proteins_taxid.fasta diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/four_human_proteins.fasta.log.txt --- a/test-data/four_human_proteins.fasta.log.txt Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/four_human_proteins.fasta.log.txt Wed Apr 19 05:27:19 2017 -0400 @@ -1,5 +1,2 @@ New DB title: Just 4 human proteins Sequence type: Protein -Keep Linkouts: T -Keep MBits: T -Maximum file size: 1000000000B diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/four_human_proteins.fasta.pin Binary file test-data/four_human_proteins.fasta.pin has changed diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/four_human_proteins_taxid.fasta.log.txt --- a/test-data/four_human_proteins_taxid.fasta.log.txt Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/four_human_proteins_taxid.fasta.log.txt Wed Apr 19 05:27:19 2017 -0400 @@ -1,5 +1,2 @@ New DB title: Just 4 human proteins Sequence type: Protein -Keep Linkouts: T -Keep MBits: T -Maximum file size: 1000000000B diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/four_human_proteins_taxid.fasta.pin Binary file test-data/four_human_proteins_taxid.fasta.pin has changed diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/rhodopsin_bufo.fasta --- a/test-data/rhodopsin_bufo.fasta Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/rhodopsin_bufo.fasta Wed Apr 19 05:27:19 2017 -0400 @@ -1,4 +1,4 @@ ->gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds +>U59921.1 Bufo bufo rhodopsin mRNA, complete cds TCTTTCTAGTTTGGGGGGGGGGACTTTAAAGAGCCGCCAATATGAACGGAACAGAAGGCCCAAACTTTTACATACCCATG TCCAACAAGACTGGGGTGGTGCGAAGCCCCTTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGCAATATTCCATTCT GTGCGCGTACATGTTCCTGCTCATTCTACTTGGGTTCCCAATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGA diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/rhodopsin_nucs.dbinfo.txt --- a/test-data/rhodopsin_nucs.dbinfo.txt Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/rhodopsin_nucs.dbinfo.txt Wed Apr 19 05:27:19 2017 -0400 @@ -1,7 +1,7 @@ Database: Rhodopsin nucleotides 6 sequences; 10,296 total bases -Date: Oct 14, 2016 2:16 PM Longest sequence: 4,301 bases +Date: Dec 2, 2016 10:38 AM Longest sequence: 4,301 bases Volumes: - /mnt/galaxy/repositories/galaxy_blast/test-data/rhodopsin_nucs.fasta + /mnt/shared/users/pc40583/repositories/galaxy_blast/test-data/rhodopsin_nucs.fasta diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/rhodopsin_nucs.fasta.log.txt --- a/test-data/rhodopsin_nucs.fasta.log.txt Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/rhodopsin_nucs.fasta.log.txt Wed Apr 19 05:27:19 2017 -0400 @@ -1,5 +1,2 @@ New DB title: Rhodopsin nucleotides Sequence type: Nucleotide -Keep Linkouts: T -Keep MBits: T -Maximum file size: 1000000000B diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/rhodopsin_nucs.fasta.nin Binary file test-data/rhodopsin_nucs.fasta.nin has changed diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/rhodopsin_nucs.fasta.nsq Binary file test-data/rhodopsin_nucs.fasta.nsq has changed diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/rhodopsin_nucs.no_gi.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rhodopsin_nucs.no_gi.fasta Wed Apr 19 05:27:19 2017 -0400 @@ -0,0 +1,138 @@ +>NM_001009242.1 Felis catus rhodopsin (RHO), mRNA +ATGAACGGGACGGAGGGCCCGAACTTCTACGTGCCCTTCTCCAACAAAACGGGTGTGGTACGCAGCCCCTTCGAGTACCC +ACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTCCTGCTCATCGTGCTTGGCTTCCCCA +TCAACTTCCTCACGCTCTACGTCACGGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCC +GTGGCTGACCTCTTCATGGTCTTCGGTGGCTTCACCACCACCCTCTACACCTCTCTGCATGGATACTTTGTCTTTGGGCC +CACAGGATGCAATTTGGAGGGCTTCTTTGCCACACTGGGCGGTGAAATTGCCCTGTGGTCTTTGGTGGTCCTGGCCATTG +AGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCATGCCATAATGGGCGTCGCTTTCACC +TGGGTCATGGCACTGGCCTGCGCTGCACCCCCCCTCGTTGGTTGGTCCAGGTACATCCCTGAAGGCATGCAGTGTTCATG +CGGGATCGACTACTACACACTCAAGCCAGAAGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCA +TCCCCATGATCGTCATCTTCTTTTGCTACGGGCAGCTTGTCTTCACAGTCAAGGAGGCGGCAGCCCAGCAGCAGGAGTCA +GCCACCACCCAGAAGGCTGAGAAGGAGGTCACTCGCATGGTCATCATCATGGTCATTGCTTTCCTGATCTGTTGGGTGCC +CTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGGTCCAACTTTGGCCCCATCTTCATGACACTCCCGGCGTTCT +TCGCAAAGTCCTCCTCCATCTACAACCCTGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACTACC +CTCTGCTGTGGCAAGAACCCACTGGGTGATGACGAGGCTTCCACAACCGGTTCCAAGACGGAGACCAGCCAGGTGGCACC +GGCCTAA +>U59921.1 Bufo bufo rhodopsin mRNA, complete cds +TCTTTCTAGTTTGGGGGGGGGGACTTTAAAGAGCCGCCAATATGAACGGAACAGAAGGCCCAAACTTTTACATACCCATG +TCCAACAAGACTGGGGTGGTGCGAAGCCCCTTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGCAATATTCCATTCT +GTGCGCGTACATGTTCCTGCTCATTCTACTTGGGTTCCCAATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGA +AGCTCCGGACACCCTTAAACTATATCCTGCTGAATTTGGCCTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACGGTG +ACAATGTACTCCTCAATGAACGGATACTTCATCCTCGGAGCCACCGGTTGCTATGTTGAAGGCTTCTTCGCTACCCTTGG +TGGTGAAATCGCCCTTTGGTCCCTGGTGGTCTTGGCCATTGAACGATACGTGGTCGTCTGTAAGCCCATGAGCAACTTCC +GATTTAGTGAGAACCATGCCGTCATGGGCGTAGCGTTCACCTGGATAATGGCTTTGTCCTGTGCTGTTCCTCCACTCCTT +GGATGGTCCAGGTACATCCCCGAGGGCATGCAGTGCTCCTGCGGAGTCGACTACTACACCCTGAAGCCCGAGGTCAACAA +CGAGTCCTTCGTCATCTACATGTTCGTCGTCCACTTCACCATCCCCCTGATTATCATTTTCTTCTGCTATGGCCGCCTGG +TGTGCACTGTGAAAGAGGCTGCAGCTCAACAGCAAGAGTCCGCCACCACCCAGAAGGCCGAGAAAGAGGTGACCAGGATG +GTGATCATCATGGTGGTCTTCTTCCTTATCTGTTGGGTCCCCTACGCCTCTGTCGCTTTCTTCATCTTCAGCAATCAGGG +CTCTGAGTTCGGCCCCATCTTCATGACCGTCCCAGCTTTCTTTGCCAAGAGTTCTTCCATCTACAACCCCGTCATCTACA +TCATGCTCAACAAGCAGTTCCGTAACTGCATGATCACCACCCTGTGCTGCGGCAAGAATCCCTTTGGAGAAGACGATGCC +TCCTCTGCCGCCACCTCCAAGACAGAGGCTTCTTCTGTTTCTTCCAGCCAGGTGTCTCCTGCATAAGACCTTCCACCAGG +CCTGTCTCAGGGTCCGCTGCCTCACACAGCTCCCACCGCCCCAACTCCGTCTCCTGCTCGCTAAGGCGGCGAAGTTCCCC +TTCCATTACATAAAACGTATCTGTTCAAGAAAGGCGACGACGAAGGAGAAGAAGAGGAGCCCCCCCGAACCCCTTCGCTG +CTGCTGAAAACGACTTGATTGCTTCTGCAACGCAACGGGGCCTTACGGCAGCGAAGGGGTTGTCATCCGGACGCGCCAAG +AATTCCTTCGAGACTGTAAATATCTTAAAGGAACCGTCCTGCTAGTTACCGACGCCGCTCCTGTAGCCGCCGTTCCCCCG +CACTCCGGCCGGTTCATACCTCTTATTTTTTTGCAATGCAACAGAAAATAATATTTTTGTTCCCACGGCTTTTCCCGGTC +AGGTCTGGTAGTGGCGGAGATTGGCCGACCCCTCGCACCTGTAATAAAGCGCAG +>GQ290303.1 Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds +GTGCCCTTCTCCAACAAGACAGGCGTGGTGCGCAGTCCCTTCGAGCATCCACAGTACTACCTGGCCGAGCCATGGCAGTT +CTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTCGGCTTCCCCATCAACTTCCTCACGCTCTATGTCACGGTTC +AGCACAAGAAGCTGCGTACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCCGACCTCTTCATGGTCTTCGGAGGC +TTCACCACCACCCTCTACACCTCCCTGCATGGATACTTTGTCTTCGGGCCTACGGGATGCAATCTGGAGGGCTTTTTTGC +CACCCTGGGAGGTATGAGCTGAGATGCGGGTAAGGAGGAGGCATAGAGGCATCTGGGAACAGTCCCAAGCTTGGGGTGAA +GGCTAAGAGGCCTTCTTCCTTGTTCTGTCATTGGCGTCGTCCGAAGCCCTCACTTAATCAACAAACAGTTTGGTGGTGAG +GCGCTGAGCTCCATTTGGAGAGGGCAGGTATCGAGCACTGTTTTATCCCCCCTGGAGTGGTGCCATTGCCTTGCTTTACA +GCAAAGAAACTGAGGATGAGAGGAGTCGAGGGTCTTGCCAGGTCACATCATGGCAGAGACAGAGCTGAGTTTCAACCCTG +CATCTATGTGCAGTTTCCCTTGGAGCAGCTATGTTAGGTCAGACCCACGGTGGGCACTGGGGAGAGAGCTGCACAAGACA +GGTCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN +NNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTGATTGCCAGGAGTGATGTGCAGCGCAAATGTCTGAATTCCATTATTAT +GTGCTCCTTCTTCCTCTGAGCCAAACATCCATCTTCATGGCTCCTAGAATTGGGTCCCACCCACATGAGCAGGTCATTTT +GTTTCCCTAGAGGGGAGAGGTCACTGCTGTGGAGGGAGGGAAGGTTCGTCCCGCTCCATGTTTCTGTTGTCTCTGCAATG +CCTTTCTCTAGGGACTCTGCCTATTGCCCCAAGAAGGACACATTCTTCTGTAAAAACTCCCTCCTGGGTTCCCAGTCTAA +TCAAGACCTCTAAACTGATTTCCATGTCCCTCATGAACCCAAAGCTCTAACTGAATTAAACTTCTCAGGACTTACTCCAC +TCTCCTCGTCCATCATGCAGCCCCTCTGCCCAGCACCCTATCTCCTCTTCTTCCCAGTGTCTGAGCCCACTGTACCCTGA +GACTTCGCTCCAGGCCTGCCCCAGGCTGCCTTCTCAGGTGCCCTCTCCCACATAGGAGGAGCACGGCCTCCTTAGACAGA +CGTGGGGTGCAGGTTGGTGGCATGCTGACTGATAGCTGACTGCCTTGCAGGTGAAATTGCCCTGTGGTCCTTGGTGGTCC +TGGCCATCGAGCGGTACGTGGTGGTATGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCCTT +GCCCTCACCTGGGTCATGGCACTGGCCTGCGCCGCGCCCCCGCTAGTCGGCTGGTCCAGGTAATGGCACTGAACAGAAGG +GAAGTGCCTCTGAGGTCTTCTTAGGGTCCCCCAGCTGGGACTCAAACCTAGGGCTGTCTGGTTCCAGGCACGGAACTGGC +GACTCCACTGGGGTTGGGGTTTAGGGCAAGGAAGGAGAGGATCAGACCCTAATGTTGTTACGTGGGTTGGTCCGCATGTC +AAGGAGAATCCAAGACACCCAATCCTTCACCTTGGCTGTGCCCCTAATCCTCATCTAAGCCAGGTTCAGATTCCAATCCT +CTTTGGCCCAGTGCTCCGTGGGAAGCTCCCTCTGACCTTGGGCCTCAGCGCCTGGGGTTGCTGAGCCTTCCTAGTATAGG +TGGTGACATCGTAGCCCCTGGGACCTGGATCCTGCCCAGTCTGCAGGCCATCATCTCCAAATGGGGCTGAGATGAGATGT +GAGGAAAGAGGGGAGACAGTGGTTTGGAAAACTGGACTGGTGGCTTTTTTGGGTTTCCAGAGGACTCATCTTCCTCTGCT +TCTAGAATATTCCCACTCTCTCTTCCCTTTCCTCATTCTTCCTGGGTTATTTTTTTTTCCCTTTGCTGAATTCGAGCCCC +ATTCCCTCCAGCCTCTTTCCCTGTCTTATCTAGCCCAGTCCAGTTATATTCTCATAGGCAGAGGCAACAGATGCTCCAAA +TTTTCTGAGGTCGGTTCCAACATCGCCACCCTCTAAAATCAGTGAAACATCCTAACTACATGCCTCATAGTCCTCCTGTT +TCCAAAAACTGCAAAGATCTCCTGGTTACCCTGTATGCCCATCTTTGGGCTAGAAAATCCTCTCACCCTGTTAATAGTAA +GACCCTGGTTTGTACAAACTGCCTCAAACACAGAGTTTAGGGGCTTTTCCCTTCTCTCCGCCAACCTCTGACAGGCAGAG +TCTGAGGCCTGGCCTCCAGCTGCTGCGGGGAGCAGGTCTGGTAAAGAATCCTGTGCAGGTCAGTGGTATACAGGTCCTGT +CAGGTGACAGCCTGGGCGAGAGACTGGAAAGTATCAGGATAACACGGCTGCCAGACGAACAACAAAACAACACTGAATTC +ACAAGGCGCATTCGAATCCTCTCTCAGTCCATTTGATCCTCAGTCACACAGCCGAGTAGACACTTTATCAACTCATTTAA +CAGAAAGGGAAAGTGAAGCCCAGAGCGAGGCCAGCAACGTGGCAGGTCACTCTGGTCATCTAGGGCCTGTTCCCAACTCT +TTCACATGTGGGTCTCCAATATGTTCCCTCCTGTCCCAATCTCTGCCGGCCCTCAGGTACATCCCAGAGGGCATGCAGTG +CTCATGTGGAATCGACTACTACACCCTCAAGCCGGAGGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACT +TCACCATCCCTATGATTGTCATATTCTTTTGCTATGGACAGCTGGTCTTCACCGTCAAGGAGGTAAGGTCATGTGTTGGG +CACTGGGGACATGCACACTGAGTGAATGGAGCCCAGCTCCATTCCCAGAGTTGCCACAGTCTGGACACCTGACCTTGTGT +CCCTGCAGGCAGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAGGTCACCCGTATGGTCATCATC +ATGGTCATTGCTTTCCTAATCTGTTGGCTGCCGTATGCCGGCGTGGCATTCTACATCTTCACCCACCAGGGCTCTAACTT +TGGCCCCATCTTCATGACCCTCCCGGCATTCTTTGCCAAGTCGTCCTCCATCTACAACCCTGTCATCTATATCATGATGA +ACAAGCAGGTGCCAGGTGGTAGGGAGGGAGGGTCTGGGTCCCCCAGGCTGCAGGCACTGCCCACAGAGGACAAGCCACAT +CCTTGACTAGGCAGACCCCAGTCTTCCCATCTGCAAAATTAGGCAGGGGAGTTCGTCTCCCCCAGGCATCAGAGACATCG +GGGAGAAATGCACATTTCTGGAGATGAATCAGCATCTCAGGGTGGGCCCAGGAACCTGCACTTCTAAAAACCATTCCACA +TGACTCTGAGGCTAGCATGAGAAGTGATGATCCACATGGTTCTGGAGGCCTGCTTTAAAAGTCAAGTGGTCAAAGTCCCA +AGCCTGGGAACGGGATGGTGCCAGTCTCCATTAAAGAGATCAAAAGGAGCTAGAAAGTCTTGTGATGAAAGATGAAGGGA +TAAAGCCGTCCTTTAACACAGATCAGTGATTTCTCTGCAGAATCCATGACCCAGTGGGAAAAAGTGGTCCCTGGAGTCAG +GCATATTGGATTCAAATCCTAGCTCTGCTATTTTCTAGCTATGTAACCTTGGGCAAGTCATCTCCCTTCTCTGTGCTTCA +GTTTCTTCTTTCATAGAAAGGGTAAAATCCCAAACTCTTGGGTTAAATGAGATAACTTACATAGCCCTTGATATGCAGAG +GCATTATGGAATGTCGTTAGTGACAAAGTTCCCTTGGGTTTGGTCCCTGGTATCTCTGGAGTGAGATTGCATATGTTCCC +TTCAGAGGGTCAGATTTGGGATGAGAGTGGAGGCTGCGAGGGCCTGAGTGGGAAGGGATTGGAGGCAAATCTCACCAACC +ATGTCAGTTTGCTACACACACTTTGGGTGGACCCTGACCCTGACTCATGCTTCTTGCCTTCCAGTTCCGGAACTGCATGC +TCACTACCCTCTGCTGTGGCAAGAACCCACTGGGTGACGATGAGGCCTCCACCACTGCCTC +>GQ290312.1 Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds +GTGCCCTTCTCCAACAAGACGGGTGTGGTGCGCAGCCCCTTCGAGTACCCGCAGTACTACCTGGCTGAGCCCTGGCAGTT +CTCCATGCTGGCTGCCTACATGTTTCTGCTGATCGTGCTCGGATTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCC +AGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCTGTGGCCAACCTCTTCATGGTCTTTGGAGGC +TTCACCACCACCCTGTATACCTCTATGCATGGATACTTCGTCTTCGGGGCCACGGGATGCAATCTGGAGGGCTTCTTTGC +CACGCTGGGCGGTGAAATCGCCCTGTGGTCCCTGGTGGTCCTGGCCATCGAGCGGTATGTGGTGGTCTGCAAGCCCATGA +GCAACTTCCGCTTTGGGGAGAACCACGCCATCATGGGCCTCGCCTTCACGTGGGTCATGGCACTGGCCTGCGCTGCACCC +CCACTAGCCGGCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGCTCGTGTGGGATTGACTACTACACGCTCAAACCGGA +GGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTGTCATTTTCTTCTGCTACG +GACAGCTGGTGTTCACAGTGAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAAGTC +ACGCGCATGGTCATCATCATGGTCGTTGCGTTCCTAATCTGTTGGCTGCCCTACGCCAGCGTGGCATTCTACATCTTTAC +CCACCAGGGCTCTAACTTTGGCCCTGTCTTCATGACCATCCCGGCATTCTTCGCCAAGTCATCCTCCATCTACAACCCGG +TCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCCTCTGCTGTGGCAAGAACCCACTGGGTGAT +GACGAAGCATCCACCACTGCCTC +>AB062417.1 Synthetic construct Bos taurus gene for rhodopsin, complete cds +ATGAACGGGACCGAGGGCCCAAACTTCTACGTGCCTTTCTCCAACAAGACGGGCGTCGTACGCAGCCCCTTCGAGGCGCC +GCAGTACTACCTGGCTGAGCCATGGCAGTTCAGCATGCTGGCCGCCTACATGTTCCTGCTGATCATGCTTGGCTTCCCCA +TCAACTTCCTCACGCTGTACGTCACAGTCCAGCACAAGAAGCTGAGGACCCCCCTCAACTACATCCTGCTCAACCTGGCC +GTGGCAGATCTCTTCATGGTGTTCGGGGGCTTCACCACCACCCTGTATACCTCTCTGCACGGGTACTTCGTGTTCGGTCC +GACGGGCTGCAACCTCGAGGGCTTCTTTGCCACCTTAGGCGGTGAAATTGCACTGTGGTCCTTGGTGGTGCTAGCCATCG +AGCGGTACGTAGTGGTGTGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCGTCGCATTCACC +TGGGTCATGGCTCTGGCCTGTGCGGCCCCCCCCCTCGTCGGCTGGTCTAGATACATCCCGGAGGGGATGCAGTGCTCGTG +CGGGATCGATTACTACACGCCCCACGAGGAGACCAACAATGAGTCGTTCGTCATCTACATGTTCGTTGTACACTTCATCA +TCCCCCTGATTGTCATATTCTTCTGCTACGGGCAGCTGGTCTTCACCGTCAAGGAGGCTGCAGCCCAGCAGCAGGAGTCG +GCCACCACTCAGAAGGCCGAGAAGGAGGTCACGCGTATGGTCATCATCATGGTCATCGCTTTCCTCATATGCTGGCTGCC +CTACGCAGGTGTGGCGTTCTACATCTTCACCCATCAGGGATCCGACTTTGGCCCCATCTTCATGACCATCCCGGCTTTCT +TTGCCAAGACGTCTGCCGTCTATAACCCCGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGGTCACCACT +CTCTGCTGTGGCAAGAACCCCCTAGGTGACGACGAGGCCTCCACGACCGTGTCCAAGACAGAGACCAGCCAAGTGGCCCC +TGCCTAA +>AB043817.1 Conger myriaster conf gene for fresh water form rod opsin, complete cds +CCGCTACTGACGAACCGCAACCATGAACGGCACTGAGGGACCTAACTTCTACATCCCCATGTCAAACGCCACTGGTGTAG +TGAGGAGTCCATTTGAATACCCGCAGTACTACCTTGCAGAACCATGGGCTTTCTCAGCTCTGTCTGCCTACATGTTCTTC +CTGATTATCGCCGGATTCCCCATCAACTTCCTCACCCTGTATGTCACCATCGAACATAAGAAACTGAGGACCCCACTGAA +CTACATTCTGCTGAACCTGGCCGTGGCCGACCTCTTCATGGTGTTTGGCGGATTCACCACCACGATGTACACCTCCATGC +ACGGCTACTTTGTCTTCGGCCCCACCGGCTGCAACATCGAAGGGTTCTTCGCCACCCTCGGCGGCGAGATTGCCCTCTGG +TGCCTCGTTGTCCTGGCCATTGAAAGGTGGATGGTCGTCTGCAAGCCAGTGACCAATTTCCGCTTCGGTGAGAGCCATGC +CATCATGGGTGTCATGGTGACCTGGACCATGGCATTGGCCTGTGCCCTCCCCCCTCTCTTCGGCTGGTCTCGGTACATTC +CGGAAGGTCTGCAGTGCTCGTGCGGGATCGACTACTATACCCGGGCGCCTGGGATCAACAATGAGTCCTTTGTGATCTAC +ATGTTTACCTGCCACTTCTCCATCCCACTCGCCGTCATCTCTTTCTGCTACGGCCGACTGGTGTGCACCGTCAAAGAGGC +CGCTGCCCAGCAACAGGAGTCCGAGACCACCCAGAGGGCTGAGCGGGAGGTCACCCGCATGGTCGTCATCATGGTCATCT +CCTTCCTGGTCTGCTGGGTGCCCTATGCCAGTGTGGCCTGGTACATCTTTACCCACCAGGGAAGCACTTTTGGGCCCATC +TTCATGACCATTCCATCCTTCTTTGCCAAGAGTTCAGCCCTCTACAACCCCATGATCTACATCTGCATGAACAAGCAGTT +CCGCCATTGCATGATCACCACCCTCTGCTGTGGGAAGAACCCCTTCGAGGAGGAGGATGGAGCGTCCGCCACTAGCTCTA +AAACTGAGGCTTCATCCGTGTCCTCCAGCTCTGTCTCCCCGGCATAAACCTTGTTTGACCGAACACCACGCATCAACACA +AAGACCAAGAATGCTGACTAAATGCTAACATTTCAGGGAAATCCAAAGACTTTTTACTATTTTTTTACACAACCATATAG +GTTGCAAACAGAGGTTTAGCCCTGTTTACAGGTTGTCATCAATGTGATGTCAGTATGTACAATATAGTCAACTTGATAGC +AAGTTGTTGGCTTATTTCAGATTGTATGGGCAATGTAATCAACCATATGTGAAATAAATTGCAA diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/tblastn_four_human_vs_rhodopsin.html --- a/test-data/tblastn_four_human_vs_rhodopsin.html Mon Nov 07 11:31:37 2016 -0500 +++ b/test-data/tblastn_four_human_vs_rhodopsin.html Wed Apr 19 05:27:19 2017 -0400 @@ -3,31 +3,22 @@ 
 
-TBLASTN 2.2.31+
+TBLASTN 2.5.0+
 
 
-Query= sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-Subject= gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
-
-Length=1047
-
-
-***** No hits found *****
+Reference:
+Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
+Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
+"Gapped BLAST and PSI-BLAST: a new generation of protein database
+search programs", Nucleic Acids Res. 25:3389-3402.
 
 
 
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
+Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
+           6 sequences; 10,296 total letters
 
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
 
 
 Query= sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
@@ -35,61 +26,6 @@
 
 Length=406
 
-Subject= gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
-cds
-
-Length=1574
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
-
-
-Query= sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-Subject= gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
-rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-
-Length=4301
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
-
-
-Query= sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-Subject= gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
-(RHO) mRNA, partial cds
-
-Length=983
-
 
 ***** No hits found *****
 
@@ -102,57 +38,7 @@
 Lambda      K        H        a         alpha    sigma
    0.299   0.0710    0.270     1.10     13.8     14.5 
 
-Effective search space used: 127710
-
-
-Query= sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-Subject= gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
-rhodopsin, complete cds
-
-Length=1047
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
-
-
-Query= sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44
-OS=Homo sapiens GN=ERP44 PE=1 SV=1
-
-Length=406
-
-Subject= gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
-water form rod opsin, complete cds
-
-Length=1344
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.347    0.182    0.684    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 127710
+Effective search space used: 1239330
 
 
 Query= sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
@@ -160,60 +46,6 @@
 
 Length=1161
 
-Subject= gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
-
-Length=1047
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
-
-
-Query= sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-Subject= gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
-cds
-
-Length=1574
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
-
-
-Query= sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-Subject= gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
-rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-
-Length=4301
-
 
 ***** No hits found *****
 
@@ -226,82 +58,7 @@
 Lambda      K        H        a         alpha    sigma
    0.299   0.0710    0.270     1.10     13.8     14.5 
 
-Effective search space used: 370988
-
-
-Query= sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-Subject= gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
-(RHO) mRNA, partial cds
-
-Length=983
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
-
-
-Query= sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-Subject= gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
-rhodopsin, complete cds
-
-Length=1047
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
-
-
-Query= sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens
-GN=BMP2K PE=1 SV=2
-
-Length=1161
-
-Subject= gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
-water form rod opsin, complete cds
-
-Length=1344
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.334    0.170    0.615    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 370988
+Effective search space used: 3667980
 
 
 Query= sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
@@ -309,10 +66,6 @@
 
 Length=1382
 
-Subject= gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
-
-Length=1047
-
 
 ***** No hits found *****
 
@@ -325,143 +78,27 @@
 Lambda      K        H        a         alpha    sigma
    0.299   0.0710    0.270     1.10     13.8     14.5 
 
-Effective search space used: 441350
-
-
-Query= sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-Subject= gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
-cds
-
-Length=1574
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
-
-
-Query= sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-Subject= gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
-rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-
-Length=4301
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
-
-
-Query= sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-Subject= gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
-(RHO) mRNA, partial cds
-
-Length=983
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
-
-
-Query= sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-Subject= gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
-rhodopsin, complete cds
-
-Length=1047
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
-
-
-Query= sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1
-SV=4
-
-Length=1382
-
-Subject= gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
-water form rod opsin, complete cds
-
-Length=1344
-
-
-***** No hits found *****
-
-
-
-Lambda      K        H        a         alpha
-   0.346    0.180    0.700    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 441350
+Effective search space used: 4374000
 
 
 Query= sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
 
 Length=348
-
-Subject= gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
+                                                                      Score     E
+Sequences producing significant alignments:                          (Bits)  Value
 
+  gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA   732     0.0  
+  gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene...  711     0.0  
+  gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodo...  658     0.0  
+  gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, compl...  646     0.0  
+  gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fres...  626     0.0  
+  gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020...  151     1e-71
+
+
+> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), 
+mRNA
 Length=1047
 
-
  Score = 732 bits (1689),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%)
  Frame = +1
@@ -491,27 +128,76 @@
 Sbjct  901   YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA  1044
 
 
+> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene 
+for rhodopsin, complete cds
+Length=1047
 
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
+ Score = 711 bits (1640),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
+ Frame = +1
+
+Query  1     MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  60
+             MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
+Sbjct  1     MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY  180
+
+Query  61    VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG  120
+             VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
+Sbjct  181   VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG  360
 
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
+Query  121   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP  180
+             GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
+Sbjct  361   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP  540
+
+Query  181   EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES  240
+             EG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
+Sbjct  541   EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES  720
 
-Effective search space used: 109230
+Query  241   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI  300
+             ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
+Sbjct  721   ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV  900
+
+Query  301   YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA  348
+             YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
+Sbjct  901   YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA  1044
 
 
-Query= sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
+> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin 
+(RHO) mRNA, partial cds
+Length=983
+
+ Score = 658 bits (1517),  Expect = 0.0, Method: Compositional matrix adjust.
+ Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
+ Frame = +1
 
-Length=348
+Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
+            VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
+Sbjct  1    VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
+
+Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV  130
+            PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
+Sbjct  181  PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV  360
 
-Subject= gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete
-cds
+Query  131  LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID  190
+            LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
+Sbjct  361  LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID  540
+
+Query  191  YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  250
+            YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
+Sbjct  541  YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  720
 
+Query  251  TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN  310
+            TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
+Sbjct  721  TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN  900
+
+Query  311  KQFRNCMLTTICCGKNPLGDDEASAT  336
+            KQFRNCMLTT+CCGKNPLGDDEAS T
+Sbjct  901  KQFRNCMLTTLCCGKNPLGDDEASTT  978
+
+
+> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete 
+cds
 Length=1574
 
-
  Score = 646 bits (1489),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%)
  Frame = +3
@@ -541,201 +227,10 @@
 Sbjct  942   YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE  1067
 
 
-
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 109230
-
-
-Query= sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-
-Length=348
-
-Subject= gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434
-rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-
-Length=4301
-
-
- Score = 151 bits (342),  Expect(2) = 1e-72, Method: Compositional matrix adjust.
- Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
- Frame = +3
-
-Query  239   ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA  298
-             ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
-Sbjct  3147  ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS  3326
-
-Query  299   AIYNPVIYIMMNKQ  312
-             +IYNPVIYIMMNKQ
-Sbjct  3327  SIYNPVIYIMMNKQ  3368
-
-
- Score = 126 bits (284),  Expect(2) = 1e-72, Method: Compositional matrix adjust.
- Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
- Frame = +2
-
-Query  177   RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA  235
-             RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +
-Sbjct  2855  RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS  3031
-
-
- Score = 229 bits (523),  Expect = 9e-67, Method: Compositional matrix adjust.
- Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
- Frame = +1
-
-Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
-            VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
-Sbjct  1    VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
-
-Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG  121
-            PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
-Sbjct  181  PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG  333
-
-
- Score = 122 bits (276),  Expect = 1e-32, Method: Compositional matrix adjust.
- Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
- Frame = +3
-
-Query  119   LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR  177
-             L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
-Sbjct  1404  LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR  1580
-
-
- Score = 57.7 bits (125),  Expect = 2e-12, Method: Compositional matrix adjust.
- Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
- Frame = +1
-
-Query  312   QFRNCMLTTICCGKNPLGDDEASATV  337
-             QFRNCMLTT+CCGKNPLGDDEAS T 
-Sbjct  4222  QFRNCMLTTLCCGKNPLGDDEASTTA  4299
-
-
-
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 109230
-
-
-Query= sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-
-Length=348
-
-Subject= gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin
-(RHO) mRNA, partial cds
-
-Length=983
-
-
- Score = 658 bits (1517),  Expect = 0.0, Method: Compositional matrix adjust.
- Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%)
- Frame = +1
-
-Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
-            VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
-Sbjct  1    VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
-
-Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV  130
-            PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV
-Sbjct  181  PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV  360
-
-Query  131  LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID  190
-            LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID
-Sbjct  361  LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID  540
-
-Query  191  YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  250
-            YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV
-Sbjct  541  YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV  720
-
-Query  251  TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN  310
-            TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN
-Sbjct  721  TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN  900
-
-Query  311  KQFRNCMLTTICCGKNPLGDDEASAT  336
-            KQFRNCMLTT+CCGKNPLGDDEAS T
-Sbjct  901  KQFRNCMLTTLCCGKNPLGDDEASTT  978
-
-
-
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 109230
-
-
-Query= sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-
-Length=348
-
-Subject= gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for
-rhodopsin, complete cds
-
-Length=1047
-
-
- Score = 711 bits (1640),  Expect = 0.0, Method: Compositional matrix adjust.
- Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%)
- Frame = +1
-
-Query  1     MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY  60
-             MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY
-Sbjct  1     MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY  180
-
-Query  61    VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG  120
-             VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG
-Sbjct  181   VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG  360
-
-Query  121   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP  180
-             GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP
-Sbjct  361   GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP  540
-
-Query  181   EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES  240
-             EG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES
-Sbjct  541   EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES  720
-
-Query  241   ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI  300
-             ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+
-Sbjct  721   ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV  900
-
-Query  301   YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA  348
-             YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
-Sbjct  901   YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA  1044
-
-
-
-Lambda      K        H        a         alpha
-   0.351    0.182    0.707    0.522     1.92 
-
-Gapped
-Lambda      K        H        a         alpha    sigma
-   0.299   0.0710    0.270     1.10     13.8     14.5 
-
-Effective search space used: 109230
-
-
-Query= sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-
-Length=348
-
-Subject= gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh
+> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh 
 water form rod opsin, complete cds
-
 Length=1344
 
-
  Score = 626 bits (1444),  Expect = 0.0, Method: Compositional matrix adjust.
  Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%)
  Frame = +2
@@ -765,6 +260,63 @@
 Sbjct  923   YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE  1048
 
 
+> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 
+rhodopsin (RHO) gene, exons 1 through 5 and partial cds
+Length=4301
+
+ Score = 151 bits (342),  Expect(2) = 1e-71, Method: Compositional matrix adjust.
+ Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%)
+ Frame = +3
+
+Query  239   ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA  298
+             ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+
+Sbjct  3147  ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS  3326
+
+Query  299   AIYNPVIYIMMNKQ  312
+             +IYNPVIYIMMNKQ
+Sbjct  3327  SIYNPVIYIMMNKQ  3368
+
+
+ Score = 126 bits (284),  Expect(2) = 1e-71, Method: Compositional matrix adjust.
+ Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%)
+ Frame = +2
+
+Query  177   RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA  235
+             RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +
+Sbjct  2855  RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS  3031
+
+
+ Score = 229 bits (523),  Expect = 3e-67, Method: Compositional matrix adjust.
+ Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
+ Frame = +1
+
+Query  11   VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  70
+            VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
+Sbjct  1    VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT  180
+
+Query  71   PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG  121
+            PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
+Sbjct  181  PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG  333
+
+
+ Score = 122 bits (276),  Expect = 2e-32, Method: Compositional matrix adjust.
+ Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%)
+ Frame = +3
+
+Query  119   LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR  177
+             L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
+Sbjct  1404  LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR  1580
+
+
+ Score = 57.7 bits (125),  Expect = 4e-12, Method: Compositional matrix adjust.
+ Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%)
+ Frame = +1
+
+Query  312   QFRNCMLTTICCGKNPLGDDEASATV  337
+             QFRNCMLTT+CCGKNPLGDDEAS T 
+Sbjct  4222  QFRNCMLTTLCCGKNPLGDDEASTTA  4299
+
+
 
 Lambda      K        H        a         alpha
    0.351    0.182    0.707    0.522     1.92 
@@ -773,8 +325,13 @@
 Lambda      K        H        a         alpha    sigma
    0.299   0.0710    0.270     1.10     13.8     14.5 
 
-Effective search space used: 109230
+Effective search space used: 1049670
+
 
+  Database: User specified sequence set (Input: rhodopsin_nucs.fasta).
+    Posted date:  Unknown
+  Number of letters in database: 10,296
+  Number of sequences in database:  6
 
 
 
diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/tblastn_four_human_vs_rhodopsin.tabular
--- a/test-data/tblastn_four_human_vs_rhodopsin.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastn_four_human_vs_rhodopsin.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.55	348	12	0	1	348	1	1044	0.0	732
-sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.80	342	51	1	1	341	42	1067	0.0	646
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.24	74	5	0	239	312	3147	3368	1e-72	151
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.53	59	5	0	177	235	2855	3031	1e-72	126
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.40	111	4	0	11	121	1	333	9e-67	229
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.22	59	4	0	119	177	1404	1580	1e-32	122
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.46	26	3	0	312	337	4222	4299	2e-12	57.7
-sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.09	326	16	0	11	336	1	978	0.0	658
-sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.39	348	23	0	1	348	1	1044	0.0	711
-sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.16	342	60	1	1	341	23	1048	0.0	626
+sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.552	348	12	0	1	348	1	1044	0.0	732
+sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.391	348	23	0	1	348	1	1044	0.0	711
+sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.092	326	16	0	11	336	1	978	0.0	658
+sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.795	342	51	1	1	341	42	1067	0.0	646
+sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.164	342	60	1	1	341	23	1048	0.0	626
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.243	74	5	0	239	312	3147	3368	1.34e-71	151
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.525	59	5	0	177	235	2855	3031	1.34e-71	126
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.396	111	4	0	11	121	1	333	3.31e-67	229
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.220	59	4	0	119	177	1404	1580	2.31e-32	122
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.462	26	3	0	312	337	4222	4299	3.61e-12	57.7
diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/tblastn_four_human_vs_rhodopsin.xml
--- a/test-data/tblastn_four_human_vs_rhodopsin.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastn_four_human_vs_rhodopsin.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -2,7 +2,7 @@
 
 
   tblastn
-  TBLASTN 2.2.31+
+  TBLASTN 2.5.0+
   Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
   
   Query_1
@@ -29,8 +29,8 @@
     
       0
       0
-      19
-      127710
+      27
+      1239330
       0.071
       0.299
       0.27
@@ -40,146 +40,6 @@
 
 
   2
-  Query_1
-  sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1
-  406
-
-
-  
-    
-      0
-      0
-      19
-      127710
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  3
-  Query_1
-  sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1
-  406
-
-
-  
-    
-      0
-      0
-      19
-      127710
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  4
-  Query_1
-  sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1
-  406
-
-
-  
-    
-      0
-      0
-      19
-      127710
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  5
-  Query_1
-  sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1
-  406
-
-
-  
-    
-      0
-      0
-      19
-      127710
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  6
-  Query_1
-  sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1
-  406
-
-
-  
-    
-      0
-      0
-      19
-      127710
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  7
-  Query_2
-  sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2
-  1161
-
-
-  
-    
-      0
-      0
-      23
-      370988
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  8
-  Query_2
-  sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2
-  1161
-
-
-  
-    
-      0
-      0
-      23
-      370988
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  9
   Query_2
   sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2
   1161
@@ -189,28 +49,8 @@
     
       0
       0
-      23
-      370988
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  10
-  Query_2
-  sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2
-  1161
-
-
-  
-    
-      0
-      0
-      23
-      370988
+      31
+      3667980
       0.071
       0.299
       0.27
@@ -219,47 +59,7 @@
   No hits found
 
 
-  11
-  Query_2
-  sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2
-  1161
-
-
-  
-    
-      0
-      0
-      23
-      370988
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  12
-  Query_2
-  sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2
-  1161
-
-
-  
-    
-      0
-      0
-      23
-      370988
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  13
+  3
   Query_3
   sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
   1382
@@ -269,48 +69,8 @@
     
       0
       0
-      24
-      441350
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  14
-  Query_3
-  sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
-  1382
-
-
-  
-    
-      0
-      0
-      24
-      441350
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  15
-  Query_3
-  sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
-  1382
-
-
-  
-    
-      0
-      0
-      24
-      441350
+      32
+      4374000
       0.071
       0.299
       0.27
@@ -319,74 +79,14 @@
   No hits found
 
 
-  16
-  Query_3
-  sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
-  1382
-
-
-  
-    
-      0
-      0
-      24
-      441350
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  17
-  Query_3
-  sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
-  1382
-
-
-  
-    
-      0
-      0
-      24
-      441350
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  18
-  Query_3
-  sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
-  1382
-
-
-  
-    
-      0
-      0
-      24
-      441350
-      0.071
-      0.299
-      0.27
-    
-  
-  No hits found
-
-
-  19
+  4
   Query_4
   sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
   348
 
 
   1
-  Subject_1
+  gi|57163782|ref|NM_001009242.1|
   gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
   Subject_1
   1047
@@ -412,28 +112,65 @@
     
   
 
-
-  
-    
-      0
-      0
-      18
-      109230
-      0.071
-      0.299
-      0.27
-    
-  
-
-
-  20
-  Query_4
-  sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-  348
-
+
+  2
+  gi|18148870|dbj|AB062417.1|
+  gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds
+  Subject_5
+  1047
+  
+    
+      1
+      711.256
+      1640
+      0
+      1
+      348
+      1
+      1044
+      0
+      1
+      325
+      337
+      0
+      348
+      MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
+      MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
+      MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
+    
+  
+
 
-  1
-  Subject_2
+  3
+  gi|283855822|gb|GQ290312.1|
+  gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds
+  Subject_4
+  983
+  
+    
+      1
+      658.198
+      1517
+      0
+      11
+      336
+      1
+      978
+      0
+      1
+      310
+      322
+      0
+      326
+      VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT
+      VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT
+      VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T
+    
+  
+
+
+  4
+  gi|2734705|gb|U59921.1|BBU59921
   gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds
   Subject_2
   1574
@@ -459,245 +196,9 @@
     
   
 
-
-  
-    
-      0
-      0
-      18
-      109230
-      0.071
-      0.299
-      0.27
-    
-  
-
-
-  21
-  Query_4
-  sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-  348
-
 
-  1
-  Subject_3
-  gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
-  Subject_3
-  4301
-  
-    
-      1
-      151.343
-      342
-      1.39567e-72
-      239
-      312
-      3147
-      3368
-      0
-      3
-      69
-      73
-      0
-      74
-      ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ
-      ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ
-      ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ
-    
-    
-      2
-      126.324
-      284
-      1.39567e-72
-      177
-      235
-      2855
-      3031
-      0
-      2
-      54
-      57
-      0
-      59
-      RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA
-      RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS
-      RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +
-    
-    
-      3
-      229.42
-      523
-      9.34154e-67
-      11
-      121
-      1
-      333
-      0
-      1
-      107
-      109
-      0
-      111
-      VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG
-      VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG
-      VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
-    
-    
-      4
-      122.873
-      276
-      1.03783e-32
-      119
-      177
-      1404
-      1580
-      0
-      3
-      55
-      56
-      0
-      59
-      LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR
-      LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR
-      L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
-    
-    
-      5
-      57.7368
-      125
-      1.50808e-12
-      312
-      337
-      4222
-      4299
-      0
-      1
-      23
-      24
-      0
-      26
-      QFRNCMLTTICCGKNPLGDDEASATV
-      QFRNCMLTTLCCGKNPLGDDEASTTA
-      QFRNCMLTT+CCGKNPLGDDEAS T 
-    
-  
-
-
-  
-    
-      0
-      0
-      18
-      109230
-      0.071
-      0.299
-      0.27
-    
-  
-
-
-  22
-  Query_4
-  sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-  348
-
-
-  1
-  Subject_4
-  gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds
-  Subject_4
-  983
-  
-    
-      1
-      658.198
-      1517
-      0
-      11
-      336
-      1
-      978
-      0
-      1
-      310
-      322
-      0
-      326
-      VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT
-      VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT
-      VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T
-    
-  
-
-
-  
-    
-      0
-      0
-      18
-      109230
-      0.071
-      0.299
-      0.27
-    
-  
-
-
-  23
-  Query_4
-  sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-  348
-
-
-  1
-  Subject_5
-  gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds
-  Subject_5
-  1047
-  
-    
-      1
-      711.256
-      1640
-      0
-      1
-      348
-      1
-      1044
-      0
-      1
-      325
-      337
-      0
-      348
-      MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA
-      MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
-      MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIPEG+QCSCGIDYYT   E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA
-    
-  
-
-
-  
-    
-      0
-      0
-      18
-      109230
-      0.071
-      0.299
-      0.27
-    
-  
-
-
-  24
-  Query_4
-  sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
-  348
-
-
-  1
-  Subject_6
+  5
+  gi|12583664|dbj|AB043817.1|
   gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds
   Subject_6
   1344
@@ -723,13 +224,117 @@
     
   
 
+
+  6
+  gi|283855845|gb|GQ290303.1|
+  gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
+  Subject_3
+  4301
+  
+    
+      1
+      151.343
+      342
+      1.34146e-71
+      239
+      312
+      3147
+      3368
+      0
+      3
+      69
+      73
+      0
+      74
+      ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ
+      ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ
+      ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS++IYNPVIYIMMNKQ
+    
+    
+      2
+      126.324
+      284
+      1.34146e-71
+      177
+      235
+      2855
+      3031
+      0
+      2
+      54
+      57
+      0
+      59
+      RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA
+      RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS
+      RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE  +
+    
+    
+      3
+      229.42
+      523
+      3.3088e-67
+      11
+      121
+      1
+      333
+      0
+      1
+      107
+      109
+      0
+      111
+      VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG
+      VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG
+      VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG
+    
+    
+      4
+      122.873
+      276
+      2.31174e-32
+      119
+      177
+      1404
+      1580
+      0
+      3
+      55
+      56
+      0
+      59
+      LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR
+      LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR
+      L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR
+    
+    
+      5
+      57.7368
+      125
+      3.61181e-12
+      312
+      337
+      4222
+      4299
+      0
+      1
+      23
+      24
+      0
+      26
+      QFRNCMLTTICCGKNPLGDDEASATV
+      QFRNCMLTTLCCGKNPLGDDEASTTA
+      QFRNCMLTT+CCGKNPLGDDEAS T 
+    
+  
+
 
   
     
       0
       0
-      18
-      109230
+      27
+      1049670
       0.071
       0.299
       0.27
diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/tblastn_four_human_vs_rhodopsin_deflines.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tblastn_four_human_vs_rhodopsin_deflines.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -0,0 +1,10 @@
+P08100	NM_001009242	96.552	348	12	0	1	348	1	1044	0.0	732
+P08100	AB062417	93.391	348	23	0	1	348	1	1044	0.0	711
+P08100	GQ290312	95.092	326	16	0	11	336	1	978	0.0	658
+P08100	U59921	84.795	342	51	1	1	341	42	1067	0.0	646
+P08100	AB043817	82.164	342	60	1	1	341	23	1048	0.0	626
+P08100	GQ290303	93.243	74	5	0	239	312	3147	3368	1.34e-71	151
+P08100	GQ290303	91.525	59	5	0	177	235	2855	3031	1.34e-71	126
+P08100	GQ290303	96.396	111	4	0	11	121	1	333	3.31e-67	229
+P08100	GQ290303	93.220	59	4	0	119	177	1404	1580	2.31e-32	122
+P08100	GQ290303	88.462	26	3	0	312	337	4222	4299	3.61e-12	57.7
diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/tblastn_four_human_vs_rhodopsin_ext.tabular
--- a/test-data/tblastn_four_human_vs_rhodopsin_ext.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastn_four_human_vs_rhodopsin_ext.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,10 +1,10 @@
-sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.55	348	12	0	1	348	1	1044	0.0	732	gi|57163782|ref|NM_001009242.1|	1689	336	343	0	98.56	0	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	1047	N/A
-sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.80	342	51	1	1	341	42	1067	0.0	646	gi|2734705|gb|U59921.1|BBU59921	1489	290	320	1	93.57	0	3	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	1574	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.24	74	5	0	239	312	3147	3368	1e-72	151	gi|283855845|gb|GQ290303.1|	342	69	73	0	98.65	0	3	ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.53	59	5	0	177	235	2855	3031	1e-72	126	gi|283855845|gb|GQ290303.1|	284	54	57	0	96.61	0	2	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.40	111	4	0	11	121	1	333	9e-67	229	gi|283855845|gb|GQ290303.1|	523	107	109	0	98.20	0	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.22	59	4	0	119	177	1404	1580	1e-32	122	gi|283855845|gb|GQ290303.1|	276	55	56	0	94.92	0	3	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.46	26	3	0	312	337	4222	4299	2e-12	57.7	gi|283855845|gb|GQ290303.1|	125	23	24	0	92.31	0	1	QFRNCMLTTICCGKNPLGDDEASATV	QFRNCMLTTLCCGKNPLGDDEASTTA	348	4301	N/A
-sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.09	326	16	0	11	336	1	978	0.0	658	gi|283855822|gb|GQ290312.1|	1517	310	322	0	98.77	0	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	348	983	N/A
-sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.39	348	23	0	1	348	1	1044	0.0	711	gi|18148870|dbj|AB062417.1|	1640	325	337	0	96.84	0	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	1047	N/A
-sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.16	342	60	1	1	341	23	1048	0.0	626	gi|12583664|dbj|AB043817.1|	1444	281	311	1	90.94	0	2	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	1344	N/A
+sp|P08100|OPSD_HUMAN	gi|57163782|ref|NM_001009242.1|	96.552	348	12	0	1	348	1	1044	0.0	732	gi|57163782|ref|NM_001009242.1|	1689	336	343	0	98.56	0	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	348	1047	N/A
+sp|P08100|OPSD_HUMAN	gi|18148870|dbj|AB062417.1|	93.391	348	23	0	1	348	1	1044	0.0	711	gi|18148870|dbj|AB062417.1|	1640	325	337	0	96.84	0	1	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	348	1047	N/A
+sp|P08100|OPSD_HUMAN	gi|283855822|gb|GQ290312.1|	95.092	326	16	0	11	336	1	978	0.0	658	gi|283855822|gb|GQ290312.1|	1517	310	322	0	98.77	0	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	348	983	N/A
+sp|P08100|OPSD_HUMAN	gi|2734705|gb|U59921.1|BBU59921	84.795	342	51	1	1	341	42	1067	0.0	646	gi|2734705|gb|U59921.1|BBU59921	1489	290	320	1	93.57	0	3	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE	348	1574	N/A
+sp|P08100|OPSD_HUMAN	gi|12583664|dbj|AB043817.1|	82.164	342	60	1	1	341	23	1048	0.0	626	gi|12583664|dbj|AB043817.1|	1444	281	311	1	90.94	0	2	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE	348	1344	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.243	74	5	0	239	312	3147	3368	1.34e-71	151	gi|283855845|gb|GQ290303.1|	342	69	73	0	98.65	0	3	ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	348	4301	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	91.525	59	5	0	177	235	2855	3031	1.34e-71	126	gi|283855845|gb|GQ290303.1|	284	54	57	0	96.61	0	2	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	348	4301	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	96.396	111	4	0	11	121	1	333	3.31e-67	229	gi|283855845|gb|GQ290303.1|	523	107	109	0	98.20	0	1	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	348	4301	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	93.220	59	4	0	119	177	1404	1580	2.31e-32	122	gi|283855845|gb|GQ290303.1|	276	55	56	0	94.92	0	3	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	348	4301	N/A
+sp|P08100|OPSD_HUMAN	gi|283855845|gb|GQ290303.1|	88.462	26	3	0	312	337	4222	4299	3.61e-12	57.7	gi|283855845|gb|GQ290303.1|	125	23	24	0	92.31	0	1	QFRNCMLTTICCGKNPLGDDEASATV	QFRNCMLTTLCCGKNPLGDDEASTTA	348	4301	N/A
diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/tblastx_rhodopsin_vs_three_human.tabular
--- a/test-data/tblastx_rhodopsin_vs_three_human.tabular	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/tblastx_rhodopsin_vs_three_human.tabular	Wed Apr 19 05:27:19 2017 -0400
@@ -1,117 +1,117 @@
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	97.39	230	6	0	1	690	88	777	0.0	559
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	91.22	148	13	0	1046	603	1133	690	0.0	308
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.12	102	6	0	742	1047	829	1134	0.0	236
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.32	88	5	0	566	303	653	390	0.0	207
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	96.34	82	3	0	248	3	335	90	0.0	182
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	83.33	204	34	0	18	629	105	716	4e-158	404
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	75.28	89	22	0	780	1046	867	1133	4e-158	161
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.28	203	38	0	609	1	696	88	5e-153	360
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	80.60	67	13	0	916	716	1003	803	5e-153	135
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	70.27	37	11	0	1047	937	1134	1024	5e-153	64.2
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	100.00	7	0	0	646	626	733	713	5e-153	24.0
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.23	65	7	0	460	266	547	353	4e-105	167
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.58	48	5	0	184	41	271	128	4e-105	104
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	77.78	45	10	0	882	748	969	835	4e-105	93.9
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	67.86	28	9	0	1045	962	1132	1049	4e-105	51.9
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	59.09	22	9	0	586	521	673	608	4e-105	33.1
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.40	86	16	0	296	553	383	640	2e-87	185
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	84.38	32	5	0	11	106	98	193	2e-87	74.8
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	71.43	35	10	0	941	1045	1028	1132	2e-87	61.6
-gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.44	18	1	0	794	847	881	934	2e-87	50.1
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	83.61	238	39	0	18	731	64	777	0.0	507
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	82.35	85	15	0	783	1037	829	1083	0.0	188
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	70.96	303	88	0	925	17	971	63	2e-130	435
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	72.22	18	5	0	1027	974	1073	1020	2e-130	35.0
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	55.32	188	84	0	605	42	651	88	7e-89	245
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	61.11	72	28	0	1037	822	1083	868	7e-89	91.3
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	49.02	204	104	0	29	640	75	686	4e-78	197
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	66.04	53	18	0	860	1018	906	1064	4e-78	85.8
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	44.44	27	15	0	689	769	735	815	4e-78	32.2
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	47.47	198	104	0	633	40	679	86	4e-65	177
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	68.09	47	15	0	1017	877	1063	923	4e-65	80.3
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	57.89	114	48	0	265	606	311	652	3e-46	137
-gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	46.30	54	29	0	19	180	65	226	3e-46	52.4
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.40	111	4	0	1	333	118	450	0.0	264
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.31	65	5	0	3174	3368	829	1023	0.0	151
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.43	56	2	0	2855	3022	616	783	0.0	141
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.22	59	4	0	1404	1580	442	618	0.0	138
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.00	25	2	0	4222	4296	1021	1095	0.0	64.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.89	9	1	0	3128	3154	783	809	0.0	22.6
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.38	111	24	0	333	1	450	118	7e-171	212
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.75	80	9	0	3367	3128	1022	783	7e-171	161
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.33	60	4	0	1582	1403	620	441	7e-171	136
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.07	56	5	0	3021	2854	782	615	7e-171	119
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	84.62	26	4	0	4301	4224	1100	1023	7e-171	52.8
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.83	72	3	0	218	3	335	120	8e-142	152
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.78	63	14	0	3368	3180	1023	835	8e-142	125
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	85.11	47	7	0	1544	1404	582	442	8e-142	108
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.36	56	11	0	3022	2855	783	616	8e-142	101
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	75.86	29	7	0	325	239	442	356	8e-142	58.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4287	4222	1086	1021	8e-142	48.7
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	90.91	11	1	0	3159	3127	814	782	8e-142	31.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.03	58	11	0	2854	3027	615	788	2e-122	128
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	60	10	0	1403	1582	441	620	2e-122	125
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.60	67	13	0	3	203	120	320	2e-122	119
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.30	23	2	0	4220	4288	1019	1087	2e-122	53.8
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.26	23	5	0	266	334	383	451	2e-122	48.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.00	20	4	0	3308	3367	963	1022	2e-122	46.0
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	18	3	0	3226	3279	881	934	2e-122	40.5
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.39	51	10	0	154	2	271	119	1e-92	97.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	73.68	57	15	0	3366	3196	1021	851	1e-92	95.9
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.82	44	8	0	1521	1390	559	428	1e-92	95.0
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.00	20	1	0	332	273	449	390	1e-92	52.4
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4288	4223	1087	1022	1e-92	48.3
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	61.54	26	10	0	2912	2835	673	596	1e-92	37.7
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	69.57	23	7	0	3023	2955	784	716	1e-92	33.1
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	76.67	30	7	0	2	91	119	208	6e-43	68.0
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.11	45	4	0	1411	1545	449	583	6e-43	68.0
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.27	22	5	0	267	332	384	449	6e-43	45.1
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.36	22	3	0	4224	4289	1023	1088	6e-43	44.1
-gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.33	12	2	0	2856	2891	617	652	6e-43	25.4
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	95.91	220	9	0	1	660	118	777	0.0	526
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	92.13	89	7	0	712	978	829	1095	0.0	212
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.01	178	16	0	536	3	653	120	1e-178	353
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.32	137	16	0	983	573	1100	690	1e-178	277
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.43	319	72	0	3	959	120	1076	4e-174	593
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	79.07	129	27	0	558	172	675	289	2e-133	248
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	76.83	82	19	0	963	718	1080	835	2e-133	159
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.09	44	7	0	133	2	250	119	2e-133	97.3
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	73.08	78	21	0	433	200	550	317	6e-102	145
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	70.15	67	20	0	799	599	916	716	6e-102	106
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	80.49	41	8	0	123	1	240	118	6e-102	84.5
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.78	27	6	0	553	473	670	590	6e-102	51.9
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	71.43	14	4	0	889	848	1006	965	6e-102	32.7
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.82	11	2	0	958	926	1075	1043	6e-102	28.6
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.85	33	5	0	239	337	356	454	4e-48	72.5
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	86.67	30	4	0	2	91	119	208	4e-48	71.2
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.40	43	8	0	404	532	521	649	4e-48	47.3
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.89	18	2	0	764	817	881	934	4e-48	44.6
-gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	87.50	8	1	0	935	958	1052	1075	4e-48	21.7
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	93.91	230	14	0	1	690	88	777	0.0	538
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	88.83	188	21	0	566	3	653	90	0.0	394
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	84.06	138	22	0	1046	633	1133	720	0.0	260
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	91.18	102	9	0	742	1047	829	1134	0.0	233
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.11	228	75	0	684	1	771	88	7e-132	333
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.27	110	36	0	1045	716	1132	803	7e-132	141
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	70.20	151	45	0	3	455	90	542	1e-128	236
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	64.04	89	32	0	780	1046	867	1133	1e-128	136
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.22	74	25	0	510	731	597	818	1e-128	111
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.04	106	36	0	242	559	329	646	2e-58	161
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	85.71	21	3	0	92	154	179	241	2e-58	53.8
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	73.68	19	5	0	791	847	878	934	2e-58	39.1
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	61.29	62	24	0	424	239	511	326	4e-55	81.3
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	74.36	39	10	0	133	17	220	104	4e-55	69.8
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	65.71	35	12	0	882	778	969	865	4e-55	56.3
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	58.14	43	18	0	649	521	736	608	4e-55	50.6
-gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.67	12	4	0	972	937	1059	1024	4e-55	23.9
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	82.13	235	42	0	11	715	76	780	0.0	498
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	78.31	83	18	0	770	1018	835	1083	0.0	177
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.29	332	92	0	1017	22	1082	87	1e-150	516
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	48.30	147	76	0	712	272	777	337	2e-98	169
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	54.17	72	33	0	1030	815	1095	880	2e-98	103
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	47.83	69	36	0	220	14	285	79	2e-98	83.5
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.00	25	7	0	782	708	847	773	2e-98	45.1
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.00	75	33	0	532	756	597	821	5e-65	87.7
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	39.42	104	63	0	19	330	84	395	5e-65	86.8
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.90	58	25	0	829	1002	894	1067	5e-65	81.3
-gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	50.00	30	15	0	388	477	453	542	5e-65	33.6
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	97.391	230	6	0	1	690	88	777	0.0	559
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	91.216	148	13	0	1046	603	1133	690	0.0	308
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.118	102	6	0	742	1047	829	1134	0.0	236
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.318	88	5	0	566	303	653	390	0.0	207
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	96.341	82	3	0	248	3	335	90	0.0	182
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	83.333	204	34	0	18	629	105	716	3.86e-157	404
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	75.281	89	22	0	780	1046	867	1133	3.86e-157	161
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.281	203	38	0	609	1	696	88	4.54e-152	360
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	80.597	67	13	0	916	716	1003	803	4.54e-152	135
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	70.270	37	11	0	1047	937	1134	1024	4.54e-152	64.2
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	100.000	7	0	0	646	626	733	713	4.54e-152	24.0
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.231	65	7	0	460	266	547	353	3.01e-104	167
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	89.583	48	5	0	184	41	271	128	3.01e-104	104
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	77.778	45	10	0	882	748	969	835	3.01e-104	93.9
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	67.857	28	9	0	1045	962	1132	1049	3.01e-104	51.9
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	59.091	22	9	0	586	521	673	608	3.01e-104	33.1
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	81.395	86	16	0	296	553	383	640	1.91e-86	185
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	84.375	32	5	0	11	106	98	193	1.91e-86	74.8
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	71.429	35	10	0	941	1045	1028	1132	1.91e-86	61.6
+gi|57163782|ref|NM_001009242.1|	ENA|BC112106|BC112106.1	94.444	18	1	0	794	847	881	934	1.91e-86	50.1
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	83.613	238	39	0	18	731	64	777	0.0	507
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	82.353	85	15	0	783	1037	829	1083	0.0	188
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	70.957	303	88	0	925	17	971	63	1.89e-129	435
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	72.222	18	5	0	1027	974	1073	1020	1.89e-129	35.0
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	55.319	188	84	0	605	42	651	88	6.62e-88	245
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	61.111	72	28	0	1037	822	1083	868	6.62e-88	91.3
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	49.020	204	104	0	29	640	75	686	3.93e-77	197
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	66.038	53	18	0	860	1018	906	1064	3.93e-77	85.8
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	44.444	27	15	0	689	769	735	815	3.93e-77	32.2
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	47.475	198	104	0	633	40	679	86	3.56e-64	177
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	68.085	47	15	0	1017	877	1063	923	3.56e-64	80.3
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	57.895	114	48	0	265	606	311	652	2.46e-45	137
+gi|2734705|gb|U59921.1|BBU59921	ENA|BC112106|BC112106.1	46.296	54	29	0	19	180	65	226	2.46e-45	52.4
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.396	111	4	0	1	333	118	450	0.0	264
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.308	65	5	0	3174	3368	829	1023	0.0	151
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	96.429	56	2	0	2855	3022	616	783	0.0	141
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.220	59	4	0	1404	1580	442	618	0.0	138
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	92.000	25	2	0	4222	4296	1021	1095	0.0	64.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.889	9	1	0	3128	3154	783	809	0.0	22.6
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.378	111	24	0	333	1	450	118	6.23e-170	212
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	88.750	80	9	0	3367	3128	1022	783	6.23e-170	161
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	93.333	60	4	0	1582	1403	620	441	6.23e-170	136
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.071	56	5	0	3021	2854	782	615	6.23e-170	119
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	84.615	26	4	0	4301	4224	1100	1023	6.23e-170	52.8
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.833	72	3	0	218	3	335	120	6.53e-141	152
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.778	63	14	0	3368	3180	1023	835	6.53e-141	125
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	85.106	47	7	0	1544	1404	582	442	6.53e-141	108
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.357	56	11	0	3022	2855	783	616	6.53e-141	101
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	75.862	29	7	0	325	239	442	356	6.53e-141	58.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.364	22	3	0	4287	4222	1086	1021	6.53e-141	48.7
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	90.909	11	1	0	3159	3127	814	782	6.53e-141	31.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.034	58	11	0	2854	3027	615	788	1.44e-121	128
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.333	60	10	0	1403	1582	441	620	1.44e-121	125
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.597	67	13	0	3	203	120	320	1.44e-121	119
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.304	23	2	0	4220	4288	1019	1087	1.44e-121	53.8
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	78.261	23	5	0	266	334	383	451	1.44e-121	48.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.000	20	4	0	3308	3367	963	1022	1.44e-121	46.0
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.333	18	3	0	3226	3279	881	934	1.44e-121	40.5
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	80.392	51	10	0	154	2	271	119	1.19e-91	97.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	73.684	57	15	0	3366	3196	1021	851	1.19e-91	95.9
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	81.818	44	8	0	1521	1390	559	428	1.19e-91	95.0
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	95.000	20	1	0	332	273	449	390	1.19e-91	52.4
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.364	22	3	0	4288	4223	1087	1022	1.19e-91	48.3
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	61.538	26	10	0	2912	2835	673	596	1.19e-91	37.7
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	69.565	23	7	0	3023	2955	784	716	1.19e-91	33.1
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	76.667	30	7	0	2	91	119	208	5.03e-42	68.0
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	91.111	45	4	0	1411	1545	449	583	5.03e-42	68.0
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	77.273	22	5	0	267	332	384	449	5.03e-42	45.1
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	86.364	22	3	0	4224	4289	1023	1088	5.03e-42	44.1
+gi|283855845|gb|GQ290303.1|	ENA|BC112106|BC112106.1	83.333	12	2	0	2856	2891	617	652	5.03e-42	25.4
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	95.909	220	9	0	1	660	118	777	0.0	526
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	92.135	89	7	0	712	978	829	1095	0.0	212
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	91.011	178	16	0	536	3	653	120	1.13e-177	353
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.321	137	16	0	983	573	1100	690	1.13e-177	277
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.429	319	72	0	3	959	120	1076	3.27e-173	593
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	79.070	129	27	0	558	172	675	289	1.77e-132	248
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	76.829	82	19	0	963	718	1080	835	1.77e-132	159
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.091	44	7	0	133	2	250	119	1.77e-132	97.3
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	73.077	78	21	0	433	200	550	317	5.37e-101	145
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	70.149	67	20	0	799	599	916	716	5.37e-101	106
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	80.488	41	8	0	123	1	240	118	5.37e-101	84.5
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	77.778	27	6	0	553	473	670	590	5.37e-101	51.9
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	71.429	14	4	0	889	848	1006	965	5.37e-101	32.7
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.818	11	2	0	958	926	1075	1043	5.37e-101	28.6
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	84.848	33	5	0	239	337	356	454	3.28e-47	72.5
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	86.667	30	4	0	2	91	119	208	3.28e-47	71.2
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	81.395	43	8	0	404	532	521	649	3.28e-47	47.3
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	88.889	18	2	0	764	817	881	934	3.28e-47	44.6
+gi|283855822|gb|GQ290312.1|	ENA|BC112106|BC112106.1	87.500	8	1	0	935	958	1052	1075	3.28e-47	21.7
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	93.913	230	14	0	1	690	88	777	0.0	538
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	88.830	188	21	0	566	3	653	90	0.0	394
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	84.058	138	22	0	1046	633	1133	720	0.0	260
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	91.176	102	9	0	742	1047	829	1134	0.0	233
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.105	228	75	0	684	1	771	88	6.59e-131	333
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	67.273	110	36	0	1045	716	1132	803	6.59e-131	141
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	70.199	151	45	0	3	455	90	542	1.16e-127	236
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	64.045	89	32	0	780	1046	867	1133	1.16e-127	136
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.216	74	25	0	510	731	597	818	1.16e-127	111
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.038	106	36	0	242	559	329	646	1.70e-57	161
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	85.714	21	3	0	92	154	179	241	1.70e-57	53.8
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	73.684	19	5	0	791	847	878	934	1.70e-57	39.1
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	61.290	62	24	0	424	239	511	326	3.59e-54	81.3
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	74.359	39	10	0	133	17	220	104	3.59e-54	69.8
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	65.714	35	12	0	882	778	969	865	3.59e-54	56.3
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	58.140	43	18	0	649	521	736	608	3.59e-54	50.6
+gi|18148870|dbj|AB062417.1|	ENA|BC112106|BC112106.1	66.667	12	4	0	972	937	1059	1024	3.59e-54	23.9
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	82.128	235	42	0	11	715	76	780	0.0	498
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	78.313	83	18	0	770	1018	835	1083	0.0	177
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.289	332	92	0	1017	22	1082	87	1.28e-149	516
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	48.299	147	76	0	712	272	777	337	2.25e-97	169
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	54.167	72	33	0	1030	815	1095	880	2.25e-97	103
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	47.826	69	36	0	220	14	285	79	2.25e-97	83.5
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	72.000	25	7	0	782	708	847	773	2.25e-97	45.1
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.000	75	33	0	532	756	597	821	4.32e-64	87.7
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	39.423	104	63	0	19	330	84	395	4.32e-64	86.8
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	56.897	58	25	0	829	1002	894	1067	4.32e-64	81.3
+gi|12583664|dbj|AB043817.1|	ENA|BC112106|BC112106.1	50.000	30	15	0	388	477	453	542	4.32e-64	33.6
diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/three_human_mRNA.dbinfo.txt
--- a/test-data/three_human_mRNA.dbinfo.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/three_human_mRNA.dbinfo.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,7 +1,7 @@
 Database: Just 3 human mRNA sequences
 	3 sequences; 10,732 total bases
 
-Date: Jul 4, 2015  3:35 PM	Longest sequence: 4,796 bases
+Date: Dec 2, 2016  10:38 AM	Longest sequence: 4,796 bases
 
 Volumes:
-	/mnt/galaxy/repositories/galaxy_blast/test-data/three_human_mRNA.fasta
+	/mnt/shared/users/pc40583/repositories/galaxy_blast/test-data/three_human_mRNA.fasta
diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/three_human_mRNA.fasta.log.txt
--- a/test-data/three_human_mRNA.fasta.log.txt	Mon Nov 07 11:31:37 2016 -0500
+++ b/test-data/three_human_mRNA.fasta.log.txt	Wed Apr 19 05:27:19 2017 -0400
@@ -1,5 +1,2 @@
 New DB title:  Just 3 human mRNA sequences
 Sequence type: Nucleotide
-Keep Linkouts: T
-Keep MBits: T
-Maximum file size: 1000000000B
diff -r 3034ce97dd33 -r 7538e2bfcd41 test-data/three_human_mRNA.fasta.nin
Binary file test-data/three_human_mRNA.fasta.nin has changed
diff -r 3034ce97dd33 -r 7538e2bfcd41 tools/ncbi_blast_plus/README.rst
--- a/tools/ncbi_blast_plus/README.rst	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/README.rst	Wed Apr 19 05:27:19 2017 -0400
@@ -7,8 +7,9 @@
 
 See the licence text below.
 
-Currently tested with NCBI BLAST+ 2.2.31, and does not work with the NCBI
-'legacy' BLAST suite (e.g. ``blastall``).
+Note this does not work with the NCBI 'legacy' BLAST suite written in C
+(e.g. binary name ``blastall``), but its replacement BLAST, which is
+written in C++ (e.g. binary name ``blastn``).
 
 Note that these wrappers (and the associated datatypes) were originally
 distributed as part of the main Galaxy repository, but as of August 2012
@@ -234,6 +235,13 @@
         - Set ``allow_duplicate_entries="False"`` in sample configuration file
 	  ``tool_data_table_conf.xml``.
         - Fix identifers with pipes in ``blastdbcmd`` wrapper (Devon Ryan).
+v0.2.00 - Updated for NCBI BLAST+ 2.5.0, where GI numbers are less visible,
+          tabular output changes with `-parse_deflines`, and percentage
+	  identifies are now given to 3dp rather than 2dp.
+        - Depends on ``package_blast_plus_2_5_0`` in ToolShed, or BioConda.
+        - ``blastxml_to_tabular`` now also gives percentage idenity to 3dp.
+        - Removed never-used binary and Python module dependency declarations
+          (internal change only).
 ======= ======================================================================
 
 
@@ -258,17 +266,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
+    $ planemo shed_update -t testtoolshed --check_diff tools/ncbi_blast_plus/
     ...
 
 or::
 
-    $ planemo shed_update -t toolshed --check_diff ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
+    $ planemo shed_update -t toolshed --check_diff tools/ncbi_blast_plus/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/galaxy_blast/tools/ncbi_blast_plus/
+    $ planemo shed_upload --tar_only tools/ncbi_blast_plus/
     ...
     $ tar -tzf shed_upload.tar.gz 
     test-data/blastdb.loc
diff -r 3034ce97dd33 -r 7538e2bfcd41 tools/ncbi_blast_plus/blastxml_to_tabular.py
--- a/tools/ncbi_blast_plus/blastxml_to_tabular.py	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/blastxml_to_tabular.py	Wed Apr 19 05:27:19 2017 -0400
@@ -60,13 +60,16 @@
 However, check this with "diff -b ..." since BLAST+ sometimes includes an extra
 space character (probably a bug).
 """
-import sys
+
+
+import os
 import re
-import os
+import sys
+
 from optparse import OptionParser
 
 if "-v" in sys.argv or "--version" in sys.argv:
-    print "v0.1.08"
+    print "v0.2.00"
     sys.exit(0)
 
 if sys.version_info[:2] >= (2, 5):
@@ -75,7 +78,7 @@
     except ImportError:
         from xml.etree import ElementTree as ElementTree
 else:
-    from galaxy import eggs
+    from galaxy import eggs  # noqa - ignore flake8 F401
     import pkg_resources
     pkg_resources.require("elementtree")
     from elementtree import ElementTree
@@ -106,11 +109,16 @@
 'qseqid,sseqid,pident' (space or comma separated).
 """
 parser = OptionParser(usage=usage)
-parser.add_option('-o', '--output', dest='output', default=None, help='output filename (defaults to stdout)', metavar="FILE")
-parser.add_option("-c", "--columns", dest="columns", default='std', help="[std|ext|col1,col2,...] standard 12 columns, extended 25 columns, or list of column names")
+parser.add_option('-o', '--output', dest='output', default=None,
+                  help='output filename (defaults to stdout)',
+                  metavar="FILE")
+parser.add_option("-c", "--columns", dest="columns", default='std',
+                  help="[std|ext|col1,col2,...] standard 12 columns, extended 25 columns, or list of column names")
 (options, args) = parser.parse_args()
 
-colnames = 'qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,sstart,send,evalue,bitscore,sallseqid,score,nident,positive,gaps,ppos,qframe,sframe,qseq,sseq,qlen,slen,salltitles'.split(',')
+colnames = ('qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,'
+            'sstart,send,evalue,bitscore,sallseqid,score,nident,positive,'
+            'gaps,ppos,qframe,sframe,qseq,sseq,qlen,slen,salltitles').split(',')
 
 if len(args) < 1:
     sys.exit("ERROR: No BLASTXML input files given; run with --help to see options.")
@@ -176,7 +184,8 @@
         if event == "end" and elem.tag == "Iteration":
             # Expecting either this, from BLAST 2.2.25+ using FASTA vs FASTA
             # sp|Q9BS26|ERP44_HUMAN
-            # Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1
+            # Endoplasmic reticulum resident protein 44
+            # OS=Homo sapiens GN=ERP44 PE=1 SV=1
             # 406
             # 
             #
@@ -206,17 +215,16 @@
                 #
                 # Or, with a local database not using -parse_seqids can get this,
                 # gnl|BL_ORD_ID|2
-                # chrIII gi|240255695|ref|NC_003074.8| Arabidopsis thaliana chromosome 3, complete sequence
+                # chrIII gi|240255695|ref|NC_003074.8| Arabidopsis
+                # thaliana chromosome 3, complete sequence
                 # 2
                 sseqid = hit.findtext("Hit_id").split(None, 1)[0]
                 hit_def = sseqid + " " + hit.findtext("Hit_def")
-                if re_default_subject_id.match(sseqid) \
-                and sseqid == hit.findtext("Hit_accession"):
+                if re_default_subject_id.match(sseqid) and sseqid == hit.findtext("Hit_accession"):
                     # Place holder ID, take the first word of the subject definition
                     hit_def = hit.findtext("Hit_def")
                     sseqid = hit_def.split(None, 1)[0]
-                if sseqid.startswith("gnl|BL_ORD_ID|") \
-                and sseqid == "gnl|BL_ORD_ID|" + hit.findtext("Hit_accession"):
+                if sseqid.startswith("gnl|BL_ORD_ID|") and sseqid == "gnl|BL_ORD_ID|" + hit.findtext("Hit_accession"):
                     # Alternative place holder ID, again take the first word of hit_def
                     hit_def = hit.findtext("Hit_def")
                     sseqid = hit_def.split(None, 1)[0]
@@ -224,7 +232,8 @@
                 for hsp in hit.findall("Hit_hsps/Hsp"):
                     nident = hsp.findtext("Hsp_identity")
                     length = hsp.findtext("Hsp_align-len")
-                    pident = "%0.2f" % (100 * float(nident) / float(length))
+                    # As of NCBI BLAST+ 2.4.0 this is given to 3dp (not 2dp)
+                    pident = "%0.3f" % (100 * float(nident) / float(length))
 
                     q_seq = hsp.findtext("Hsp_qseq")
                     h_seq = hsp.findtext("Hsp_hseq")
@@ -233,13 +242,11 @@
                     gapopen = str(len(q_seq.replace('-', ' ').split()) - 1 +
                                   len(h_seq.replace('-', ' ').split()) - 1)
 
-                    mismatch = m_seq.count(' ') + m_seq.count('+') \
-                             - q_seq.count('-') - h_seq.count('-')
+                    mismatch = m_seq.count(' ') + m_seq.count('+') - q_seq.count('-') - h_seq.count('-')
                     # TODO - Remove this alternative mismatch calculation and test
                     # once satisifed there are no problems
-                    expected_mismatch = len(q_seq) \
-                                      - sum(1 for q, h in zip(q_seq, h_seq)
-                                            if q == h or q == "-" or h == "-")
+                    expected_mismatch = len(q_seq) - sum(1 for q, h in zip(q_seq, h_seq)
+                                                         if q == h or q == "-" or h == "-")
                     xx = sum(1 for q, h in zip(q_seq, h_seq) if q == "X" and h == "X")
                     if not (expected_mismatch - q_seq.count("X") <= int(mismatch) <= expected_mismatch + xx):
                         sys.exit("%s vs %s mismatches, expected %i <= %i <= %i"
diff -r 3034ce97dd33 -r 7538e2bfcd41 tools/ncbi_blast_plus/check_no_duplicates.py
--- a/tools/ncbi_blast_plus/check_no_duplicates.py	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/check_no_duplicates.py	Wed Apr 19 05:27:19 2017 -0400
@@ -9,8 +9,9 @@
 will return a non-zero error if any duplicate identifiers
 are found.
 """
+
+import os
 import sys
-import os
 
 if "-v" in sys.argv or "--version" in sys.argv:
     print("v0.0.23")
diff -r 3034ce97dd33 -r 7538e2bfcd41 tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml
--- a/tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/ncbi_blastdbcmd_wrapper.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -79,12 +79,13 @@
             
         
         
+            
             
             
             
             
             
-            
+            
         
         
             
diff -r 3034ce97dd33 -r 7538e2bfcd41 tools/ncbi_blast_plus/ncbi_macros.xml
--- a/tools/ncbi_blast_plus/ncbi_macros.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/ncbi_macros.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -1,13 +1,12 @@
 
-    0.1.08
+    0.2.00
     
         
         
     
     
         
-            @BINARY@
-            blast+
+            blast
         
         
             
diff -r 3034ce97dd33 -r 7538e2bfcd41 tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml
--- a/tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -110,7 +110,8 @@
             
         
         
-            
+            
+            
             
             
             
@@ -123,9 +124,10 @@
             
             
             
-            
+            
         
         
+            
             
             
             
@@ -138,7 +140,7 @@
             
             
             
-            
+            
         
     
     
diff -r 3034ce97dd33 -r 7538e2bfcd41 tools/ncbi_blast_plus/tool_dependencies.xml
--- a/tools/ncbi_blast_plus/tool_dependencies.xml	Mon Nov 07 11:31:37 2016 -0500
+++ b/tools/ncbi_blast_plus/tool_dependencies.xml	Wed Apr 19 05:27:19 2017 -0400
@@ -1,6 +1,6 @@
 
 
-    
-        
+    
+