view tool_dependencies.xml @ 1:7d6da4982f19 draft default tip

Uploaded

<?xml version="1.0"?>
<tool_dependency>
    <package name="bamtools" version="2.3.0_2d7685d2ae">
        <install version="1.0">
            <actions_group>
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bamtools/bamtools-2.3.0_2d7685d2ae.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable name="BAMTOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="C_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable>
                    <environment_variable name="CPLUS_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
Binary files in this package are compiled from source code version 2d7685d2ae
This is package dependency for tools relying on bamtools toolkit developed by by Derek Barnett (https://github.com/pezmaster31/bamtools). This package is distributed as x86_64 binaries only. These binaries should work on any of our stated supported linux platforms other than RHEL/CentOS 5.
        </readme>
    </package>
</tool_dependency>