Mercurial > repos > devteam > package_bioc_qvalue_1_34_0

changeset 0:11735242a19e draft default tip

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Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:47:53 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Apr 01 10:47:53 2014 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="R" version="2.11.0">
+      <repository changeset_revision="6e1b17857732" name="package_r_2_11_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bioc_qvalue" version="1.34.0">
+      <install version="1.0">
+          <actions>
+              <action type="download_file">http://bioconductor.org/packages/2.12/bioc/src/contrib/qvalue_1.34.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                  <repository changeset_revision="6e1b17857732" name="package_r_2_11_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu">
+                      <package name="R" version="2.11.0" />
+                    </repository>
+                </action>
+                <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL qvalue_1.34.0.tar.gz</action>
+                <action type="set_environment">
+                  <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>