Mercurial > repos > devteam > package_blast_plus_2_2_26
changeset 0:85e43fb3f363 draft default tip
Imported from capsule None
| author | devteam |
|---|---|
| date | Mon, 19 May 2014 12:32:56 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 64 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon May 19 12:32:56 2014 -0400 @@ -0,0 +1,64 @@ +<?xml version='1.0' encoding='utf-8'?> +<tool_dependency> + <package name="blast+" version="2.2.26+"> + <install version="1.0"> + <actions_group> + <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> + <actions os="darwin" architecture="x86_64"> + <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. --> + <actions os="darwin" architecture="i386"> + <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> + <actions os="linux" architecture="x86_64"> + <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-x64-linux.tar.gz</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). --> + <actions os="linux" architecture="i386"> + <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). --> + <actions os="linux" architecture="i686"> + <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> + <actions> + <action type="download_by_url" target_filename="ncbi-blast-2.2.26+.tgz">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> + <action type="shell_command">cd c++ && ./configure --prefix=$INSTALL_DIR && make && make install</action> + </actions> + <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme> +These links provide information for building the NCBI Blast+ package in most environments. + +System requirements +http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download + </readme> + </package> +</tool_dependency> \ No newline at end of file